LOCUS       NM_001395676            1249 bp    mRNA    linear   ROD 22-SEP-2024
DEFINITION  Rattus norvegicus similar to human chromosome 15 open reading frame
            48 (C3h15orf48), transcript variant 2, mRNA.
ACCESSION   NM_001395676 XM_039104796
VERSION     NM_001395676.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1249)
  AUTHORS   Morgenstern,M., Peikert,C.D., Lubbert,P., Suppanz,I., Klemm,C.,
            Alka,O., Steiert,C., Naumenko,N., Schendzielorz,A., Melchionda,L.,
            Muhlhauser,W.W.D., Knapp,B., Busch,J.D., Stiller,S.B.,
            Dannenmaier,S., Lindau,C., Licheva,M., Eickhorst,C., Galbusera,R.,
            Zerbes,R.M., Ryan,M.T., Kraft,C., Kozjak-Pavlovic,V., Drepper,F.,
            Dennerlein,S., Oeljeklaus,S., Pfanner,N., Wiedemann,N. and
            Warscheid,B.
  TITLE     Quantitative high-confidence human mitochondrial proteome and its
            dynamics in cellular context
  JOURNAL   Cell Metab 33 (12), 2464-2483 (2021)
   PUBMED   34800366
REFERENCE   2  (bases 1 to 1249)
  AUTHORS   Archambaud,C., Nahori,M.A., Soubigou,G., Becavin,C., Laval,L.,
            Lechat,P., Smokvina,T., Langella,P., Lecuit,M. and Cossart,P.
  TITLE     Impact of lactobacilli on orally acquired listeriosis
  JOURNAL   Proc Natl Acad Sci U S A 109 (41), 16684-16689 (2012)
   PUBMED   23012479
REFERENCE   3  (bases 1 to 1249)
  AUTHORS   Zhou,J., Wang,H., Lu,A., Hu,G., Luo,A., Ding,F., Zhang,J., Wang,X.,
            Wu,M. and Liu,Z.
  TITLE     A novel gene, NMES1, downregulated in human esophageal squamous
            cell carcinoma
  JOURNAL   Int J Cancer 101 (4), 311-316 (2002)
   PUBMED   12209954
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000003.1.
            
            On Jul 30, 2021 this sequence version replaced XM_039104796.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: FQ216036.1, BC086337.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760389
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-186               JAXUCZ010000003.1  130173569-130173754
            187-272             JAXUCZ010000003.1  130173906-130173991
            273-333             JAXUCZ010000003.1  130174836-130174896
            334-1249            JAXUCZ010000003.1  130176173-130177088
FEATURES             Location/Qualifiers
     source          1..1249
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /map="3q35"
     gene            1..1249
                     /gene="C3h15orf48"
                     /gene_synonym="Nmes1"
                     /note="similar to human chromosome 15 open reading frame
                     48"
                     /db_xref="GeneID:302884"
                     /db_xref="RGD:1359583"
     exon            1..186
                     /gene="C3h15orf48"
                     /gene_synonym="Nmes1"
                     /inference="alignment:Splign:2.1.0"
     CDS             151..402
                     /gene="C3h15orf48"
                     /gene_synonym="Nmes1"
                     /codon_start=1
                     /product="normal mucosa of esophagus-specific gene 1
                     protein"
                     /protein_id="NP_001382605.1"
                     /db_xref="GeneID:302884"
                     /db_xref="RGD:1359583"
                     /translation="MGIFQRLMKNKELIPLAFFISAAATGASSFALYALKKTDVVIDR
                     KRNPEPWETVDPTQPQKLLTINQEWKPVEELQRVRRATR"
     exon            187..272
                     /gene="C3h15orf48"
                     /gene_synonym="Nmes1"
                     /inference="alignment:Splign:2.1.0"
     exon            273..333
                     /gene="C3h15orf48"
                     /gene_synonym="Nmes1"
                     /inference="alignment:Splign:2.1.0"
     exon            334..1249
                     /gene="C3h15orf48"
                     /gene_synonym="Nmes1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 atctttctga aaagttctgt ggagcgggag gtcgccaggc cttctgcgat tgctgaaccg
       61 ctgggtgtcc ggggtccggg ggaagatgtt tttgaccagt atcttggatt tttccttctt
      121 ctagatttgg aattctacac taaagtcatc atgggcattt tccagagatt gatgaaaaat
      181 aaggaactca ttcctttggc gttttttata agcgcggcag ccactggagc ctcatctttt
      241 gctttgtatg ctttgaaaaa aaccgacgtg gttattgatc gaaaaagaaa cccagaacct
      301 tgggaaacgg tggatcctac tcaaccccaa aagcttttaa ccatcaacca ggaatggaag
      361 cctgttgagg agctgcagag agtccggaga gcgaccagat gattactcgc tgctcctttc
      421 ttccaaagaa cactctatga atctagtgga aacacttctg cacaaactcg attttgatgc
      481 cagtgtgcgg aaatgcttct gctacatttt tagggtttgc ctgcattctt tggatcctgc
      541 ataagcaagc gaaggtagca catagtctaa aatggttttt cgtgtttatt ggtgtaaatt
      601 tcaattttac agttgaaatt ttatgtttgt gatggttgga tattttcctt gaaatgtata
      661 aacatgtaaa aattagatta ctgcctgtaa taaataatta gatggctatc tgtaaaacgt
      721 atgacctgtg caagagatat caaaaattac ttaactttaa aagtggaggg ggcatctttt
      781 tatgggaaca agcacatttt gaagtataaa acttcaactt ttaaatatca agtgcatatt
      841 tctgagtttt atttccaagt ccattcactc tcaccccaga aacttcttga gcatgtattg
      901 tttgcagtaa agaaaaaggg tgcaaagtta gcaagggttt ggatatggtc cgtttggagc
      961 atggagacag ctgagagggc tgcctgggaa tggctggtga ccaggaacct gaggcatgca
     1021 gagaccagcc ctgcagatct ccgtgggact gctgctcccc aggaggatgg agagaggagc
     1081 ctggggagcc ctggccagca cccagtacag tctgaccaaa cagagaccag gcgattgttt
     1141 aattctttcc agaatgtgcc cccaacccca ttccttgccg actcctaaaa atgggacgaa
     1201 gtaggaagtt ccttttcatt gactgtaaaa taaatacagc tataattca
//
