LOCUS       XM_039094380            1275 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus LysM domain containing 4 (Lysmd4),
            transcript variant X6, mRNA.
ACCESSION   XM_039094380
VERSION     XM_039094380.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051336.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1275
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1275
                     /gene="Lysmd4"
                     /note="LysM domain containing 4; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 7
                     ESTs, 3 long SRA reads, 1 Protein, and 99% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     182 samples with support for all annotated introns"
                     /db_xref="GeneID:681647"
                     /db_xref="RGD:1592887"
     CDS             375..710
                     /gene="Lysmd4"
                     /codon_start=1
                     /product="lysM and putative peptidoglycan-binding
                     domain-containing protein 4 isoform X5"
                     /protein_id="XP_038950308.1"
                     /db_xref="GeneID:681647"
                     /db_xref="RGD:1592887"
                     /translation="MPGVPFQPLGNEKLRKEMRQKEVLAKTFQGPAVVCRTPNSHVYM
                     FKNGSGDSGDSSEEESHQVVLRPRGKERQKNSSQPPGTGTMVLLQRELAQEDSLNKLA
                     LQYGCKHSE"
ORIGIN      
        1 gggagcgagg tacccgaact tggagcgggg tctgctgggt tgacttgggg ggccaggggt
       61 cgcttgtcac cgtgggctcg gtgggggctg ccactccagg gccagtgcct gtgtccacgg
      121 agggctggtg ccggctcgcg ggagtggcag gatgtctagt ctttggaaag ttgggtcctg
      181 gcctgtttag gcccaggggc ggggacatca caaatttgtt ttgtcctctg cttaaagaca
      241 gcccacctgt cattggaagg aaactgaaac ctcttctggc cgtccggtga caggggcaca
      301 gaatttgaga ccagagggag atgcgctgag gttggctgtt cccttaaagg gccactcaga
      361 agggaccgcc aggaatgcct ggagtcccat tccagccact tggaaatgaa aagttaagaa
      421 aagaaatgag gcagaaggaa gtgttagcca agaccttcca aggcccagct gttgtctgta
      481 ggactccaaa cagtcatgtt tacatgttca agaatggcag cggggactcc ggggactcct
      541 ccgaggaaga gtcacatcag gtggtgttac gaccccgggg caaggaacgc cagaagaaca
      601 gcagccaacc gccaggaacg ggcaccatgg tgctgctgca gcgggagctg gcccaggaag
      661 acagtctcaa taagctggct ctccagtatg gctgcaaaca ctcagagtga ttaacagtgg
      721 caaagtaagt tggaaagtgt ttctggaatc gctcttttct cctgcaatga aacagtttgt
      781 ttcacgccgt tgaccccatg ctgtatacat gctatataca tgctatacac atgctataac
      841 catgctgtat acgtgctatt accatgctct atactgacag cagctttcac caaggctgca
      901 tcagctacac aattaaaaaa aaaaaaacac ctatctccta aaaattgtct gtggtttatc
      961 taaaaaagat ccaaataagc aaaaagactg tgtgggtgtg ggagtctttt ccagatagag
     1021 gctcatctcc agggacacag agcatcttta cattgtcccg gcctttgtat ttgtatctta
     1081 cagtctgctt ccgtaggcat agcatatgct ttatagacca tggccaaaac agcaacaaca
     1141 acaacaacaa caacaaaaac aaaaaaaaaa taccaaaaca accaaacaaa aaaacccacc
     1201 ccaccttccc aacaaagtct tcaaagatag acttatcttt cattcatgtc agaatgacaa
     1261 tctctgagaa agcca
//
