LOCUS       NM_001401375            3128 bp    mRNA    linear   ROD 01-APR-2024
DEFINITION  Rattus norvegicus LysM domain containing 4 (Lysmd4), transcript
            variant 2, mRNA.
ACCESSION   NM_001401375 XM_003748880
VERSION     NM_001401375.1
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000001.1.
            
            On Feb 9, 2022 this sequence version replaced XM_003748880.5.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26360190.535028.1,
                                           SRR26360186.2412162.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760386
                                           [ECO:0000348]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-43                JAXUCZ010000001.1  130249479-130249521
            44-219              JAXUCZ010000001.1  130249750-130249925
            220-504             JAXUCZ010000001.1  130250517-130250801
            505-3128            JAXUCZ010000001.1  130252734-130255357
FEATURES             Location/Qualifiers
     source          1..3128
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /map="1q22"
     gene            1..3128
                     /gene="Lysmd4"
                     /note="LysM domain containing 4"
                     /db_xref="GeneID:681647"
                     /db_xref="RGD:1592887"
     exon            1..43
                     /gene="Lysmd4"
                     /inference="alignment:Splign:2.1.0"
     exon            44..219
                     /gene="Lysmd4"
                     /inference="alignment:Splign:2.1.0"
     CDS             181..1113
                     /gene="Lysmd4"
                     /note="isoform 1 is encoded by transcript variant 2; LysM,
                     putative peptidoglycan-binding, domain containing 4; lysM
                     and putative peptidoglycan-binding domain-containing
                     protein 4"
                     /codon_start=1
                     /product="lysM and putative peptidoglycan-binding
                     domain-containing protein 4 isoform 1"
                     /protein_id="NP_001388304.1"
                     /db_xref="GeneID:681647"
                     /db_xref="RGD:1592887"
                     /translation="MPGVPFQPLGNEKLRKEMRQKEVLAKTFQGPAVVCRTPNSHVYM
                     FKNGSGDSGDSSEEESHQVVLRPRGKERQKNSSQPPGTGTMVLLQRELAQEDSLNKLA
                     LQYGCKVADIKKANNFIREQDLYALKSIKIPVRNHGILTETHQELMPLGASSSETRVT
                     LVELPEDGDASGATAQGNQLTEFFKGIDENIERAVQSDVFHSDGCCVEAPDQPLLPIT
                     QKPAADGADCGIQWWNAVFLMLLIGIVLPVFYLVYFKIQATGETSDSLNTTVVPNGSM
                     TLSPVPGQAPRLAVAVPTLPASDNQVSPTTEAGA"
     exon            220..504
                     /gene="Lysmd4"
                     /inference="alignment:Splign:2.1.0"
     exon            505..3128
                     /gene="Lysmd4"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 cagccaatcg gcgggcgcgg tggcggtgga gcctgggagc gagacagccc acctgtcatt
       61 ggaaggaaac tgaaacctct tctggccgtc cggtgacagg ggcacagaat ttgagaccag
      121 agggagatgc gctgaggttg gctgttccct taaagggcca ctcagaaggg accgccagga
      181 atgcctggag tcccattcca gccacttgga aatgaaaagt taagaaaaga aatgaggcag
      241 aaggaagtgt tagccaagac cttccaaggc ccagctgttg tctgtaggac tccaaacagt
      301 catgtttaca tgttcaagaa tggcagcggg gactccgggg actcctccga ggaagagtca
      361 catcaggtgg tgttacgacc ccggggcaag gaacgccaga agaacagcag ccaaccgcca
      421 ggaacgggca ccatggtgct gctgcagcgg gagctggccc aggaagacag tctcaataag
      481 ctggctctcc agtatggctg caaagtcgca gatatcaaga aagcgaacaa cttcatcaga
      541 gaacaagacc tgtatgctct gaaatcgatc aagattccag tgagaaatca tgggatcctc
      601 acagagaccc accaagaact aatgcccctt ggggcctcct cttccgagac cagggtgacc
      661 ctggtagaac tgcccgaaga tggagacgcc tctggggcaa ctgctcaggg caaccagttg
      721 acagagttct tcaagggcat cgatgagaac attgagcggg ctgtgcaatc tgatgtcttt
      781 cacagtgacg gctgttgtgt ggaggccccg gatcagccgc tgctccccat aacccagaag
      841 ccagcagctg atggtgcgga ctgcgggatt cagtggtgga atgctgtctt ccttatgctt
      901 ctcattggca ttgtgctgcc agtgttctat cttgtctact tcaaaataca agccaccggg
      961 gaaacctcag atagtttgaa cacaactgtt gttcccaacg gctcgatgac actgagccca
     1021 gttccagggc aagcccccag gttggcagtt gcagtgccta ccctccccgc ttcagacaac
     1081 caggtcagcc caaccactga agcaggggcc taggttcatt ctcttcctag agttgtcagg
     1141 ctttgacaat tggcccttga tgtgtgtaac tgtcaccatc tgattgcaga cggcattgca
     1201 tcttgcttcc tgagatatgt ggacaccgtg gcaatctgga ttgtataggc ttggcctaat
     1261 cccaggatgc aggagcccag acatccacca ccccagcaag agagacattg acatggaact
     1321 cgtggccatt tcttgaagat atgtagggac ctgcggtgag cgcctgtaca gccattctgt
     1381 gcatgctcct aaggagaagg tgacgggatc tgcggtgtta ctgccccccg gtgttggatg
     1441 gggtcaaatg actgtcacag tgtccctgcc tgctaagggg aaaggtgggc tcagagacat
     1501 gccctgtgtc tagatcaagg tgctatgtag tatgtcactg agtctgtcac agttgacagc
     1561 ctgacaggtt tgcctcactt ggccccactg aggcagtgct gcttcagaag tgaggtagcc
     1621 ccaaatccaa actgccatcc ttggatttaa gctacacctc ccagaggcag gccaggcagc
     1681 tctctggggc agctccccgg attcccccgg ttggtatctg ggttgcagct gttactagca
     1741 agtggtttga agggattgca tccaccatta aggttccaac acatggacct cggaagcaaa
     1801 ctggttgcca gcccagtgtt gtcaagaact gtgggcctca ccccaacccc taccatgagt
     1861 gccccttcct gctgcctcct tgattcatcc attctttggg tccttagagc aaacttgcag
     1921 gtgctgcatc tcagtgttaa aaccagcaca gtgtcagtca gctttctgtt actgtaacaa
     1981 aatctccatt gataaaggtt tatcttggct cctggtacca atccatggcc tgatttgggg
     2041 agtgggggtg ggggtggggg ctacagtaag aacatcatgg aggagagtgt gtgatagaac
     2101 agattgctca tatgacaggt aagagagaag gggagacaag gagcttgggc gcaggtatca
     2161 ccttcaaagt tctgcctgca gtgagctaac ttcctcccac taggccccat ttcttaaagg
     2221 acttcccgac acattccttc ccaacactga gatgaggtcc aagtctttaa gacatttgcc
     2281 tttgggggac atatccaaac cccttcaagg taaccctgac agtgaaaagc tgtagagagg
     2341 tagagggcga caccagatgc tggagggtgc aggaggctca ggctttccct gaggcaatta
     2401 gccagccaag ccctgtaggg tgtaggggga agggagaagc cagcttgcct tgtcacagca
     2461 ggaacaggca gagcttgctg gagctgagcc tcgggcagtc aggttagctt ctgtgacggt
     2521 ttgcaacttg atacataggc ctagaaatct gaccagagga gaaggatagt acatgggcct
     2581 cctgtctaaa ctatccaccc agggtgcaaa taccaaattt aaatcgcctt cagaattagt
     2641 atttttaggc caaaaatgaa cccataaatc ttggtacagt aaacatcttg ataatgtgat
     2701 tcctatctag atgctcaagg ccattgtggc agtgaaattt ctcttgaatg ttgtcattaa
     2761 ctccatcagg cagggctcag agtccgatgg gaaataattt tttggcagag aatgtctata
     2821 tttttttctg tattctgtct caagtttggg gacaagcata cagccctgtg tggaatccta
     2881 agtagaatgt gacaagggat ctgcagtgac agggctcctg gggttggatg gggtcaaatg
     2941 actgtcatag tgtccctgcc tgctgagggc aggggtgggc ttggctcaga gatgtgtgtt
     3001 ccgtgtctag gcagaccacg gtgctacaca atggtatcag tatgtcactg agttttagac
     3061 atgttacagt tttaacttgt atttctgtat ttttctcaag tggaataaaa tttcttctgt
     3121 gaaggaaa
//
