LOCUS       NM_001401374            3356 bp    mRNA    linear   ROD 01-APR-2024
DEFINITION  Rattus norvegicus LysM domain containing 4 (Lysmd4), transcript
            variant 1, mRNA.
ACCESSION   NM_001401374 XM_017590158
VERSION     NM_001401374.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000001.1.
            
            On Feb 9, 2022 this sequence version replaced XM_017590158.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26360181.2569899.1,
                                           SRR26360190.146508.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760386
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-447               JAXUCZ010000001.1  130249479-130249925
            448-732             JAXUCZ010000001.1  130250517-130250801
            733-3356            JAXUCZ010000001.1  130252734-130255357
FEATURES             Location/Qualifiers
     source          1..3356
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /map="1q22"
     gene            1..3356
                     /gene="Lysmd4"
                     /note="LysM domain containing 4"
                     /db_xref="GeneID:681647"
                     /db_xref="RGD:1592887"
     exon            1..447
                     /gene="Lysmd4"
                     /inference="alignment:Splign:2.1.0"
     CDS             409..1341
                     /gene="Lysmd4"
                     /note="isoform 1 is encoded by transcript variant 1; LysM,
                     putative peptidoglycan-binding, domain containing 4; lysM
                     and putative peptidoglycan-binding domain-containing
                     protein 4"
                     /codon_start=1
                     /product="lysM and putative peptidoglycan-binding
                     domain-containing protein 4 isoform 1"
                     /protein_id="NP_001388303.1"
                     /db_xref="GeneID:681647"
                     /db_xref="RGD:1592887"
                     /translation="MPGVPFQPLGNEKLRKEMRQKEVLAKTFQGPAVVCRTPNSHVYM
                     FKNGSGDSGDSSEEESHQVVLRPRGKERQKNSSQPPGTGTMVLLQRELAQEDSLNKLA
                     LQYGCKVADIKKANNFIREQDLYALKSIKIPVRNHGILTETHQELMPLGASSSETRVT
                     LVELPEDGDASGATAQGNQLTEFFKGIDENIERAVQSDVFHSDGCCVEAPDQPLLPIT
                     QKPAADGADCGIQWWNAVFLMLLIGIVLPVFYLVYFKIQATGETSDSLNTTVVPNGSM
                     TLSPVPGQAPRLAVAVPTLPASDNQVSPTTEAGA"
     exon            448..732
                     /gene="Lysmd4"
                     /inference="alignment:Splign:2.1.0"
     exon            733..3356
                     /gene="Lysmd4"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 cagccaatcg gcgggcgcgg tggcggtgga gcctgggagc gaggtacccg aacttggagc
       61 ggggtctgct gggttgactt ggggggccag gggtcgcttg tcaccgtggg ctcggtgggg
      121 gctgccactc cagggccagt gcctgtgtcc acggagggct ggtgccggct cgcgggagtg
      181 gcaggatgtc tagtctttgg aaagttgggt cctggcctgt ttaggcccag gggcggggac
      241 atcacaaatt tgttttgtcc tctgcttaaa gacagcccac ctgtcattgg aaggaaactg
      301 aaacctcttc tggccgtccg gtgacagggg cacagaattt gagaccagag ggagatgcgc
      361 tgaggttggc tgttccctta aagggccact cagaagggac cgccaggaat gcctggagtc
      421 ccattccagc cacttggaaa tgaaaagtta agaaaagaaa tgaggcagaa ggaagtgtta
      481 gccaagacct tccaaggccc agctgttgtc tgtaggactc caaacagtca tgtttacatg
      541 ttcaagaatg gcagcgggga ctccggggac tcctccgagg aagagtcaca tcaggtggtg
      601 ttacgacccc ggggcaagga acgccagaag aacagcagcc aaccgccagg aacgggcacc
      661 atggtgctgc tgcagcggga gctggcccag gaagacagtc tcaataagct ggctctccag
      721 tatggctgca aagtcgcaga tatcaagaaa gcgaacaact tcatcagaga acaagacctg
      781 tatgctctga aatcgatcaa gattccagtg agaaatcatg ggatcctcac agagacccac
      841 caagaactaa tgccccttgg ggcctcctct tccgagacca gggtgaccct ggtagaactg
      901 cccgaagatg gagacgcctc tggggcaact gctcagggca accagttgac agagttcttc
      961 aagggcatcg atgagaacat tgagcgggct gtgcaatctg atgtctttca cagtgacggc
     1021 tgttgtgtgg aggccccgga tcagccgctg ctccccataa cccagaagcc agcagctgat
     1081 ggtgcggact gcgggattca gtggtggaat gctgtcttcc ttatgcttct cattggcatt
     1141 gtgctgccag tgttctatct tgtctacttc aaaatacaag ccaccgggga aacctcagat
     1201 agtttgaaca caactgttgt tcccaacggc tcgatgacac tgagcccagt tccagggcaa
     1261 gcccccaggt tggcagttgc agtgcctacc ctccccgctt cagacaacca ggtcagccca
     1321 accactgaag caggggccta ggttcattct cttcctagag ttgtcaggct ttgacaattg
     1381 gcccttgatg tgtgtaactg tcaccatctg attgcagacg gcattgcatc ttgcttcctg
     1441 agatatgtgg acaccgtggc aatctggatt gtataggctt ggcctaatcc caggatgcag
     1501 gagcccagac atccaccacc ccagcaagag agacattgac atggaactcg tggccatttc
     1561 ttgaagatat gtagggacct gcggtgagcg cctgtacagc cattctgtgc atgctcctaa
     1621 ggagaaggtg acgggatctg cggtgttact gccccccggt gttggatggg gtcaaatgac
     1681 tgtcacagtg tccctgcctg ctaaggggaa aggtgggctc agagacatgc cctgtgtcta
     1741 gatcaaggtg ctatgtagta tgtcactgag tctgtcacag ttgacagcct gacaggtttg
     1801 cctcacttgg ccccactgag gcagtgctgc ttcagaagtg aggtagcccc aaatccaaac
     1861 tgccatcctt ggatttaagc tacacctccc agaggcaggc caggcagctc tctggggcag
     1921 ctccccggat tcccccggtt ggtatctggg ttgcagctgt tactagcaag tggtttgaag
     1981 ggattgcatc caccattaag gttccaacac atggacctcg gaagcaaact ggttgccagc
     2041 ccagtgttgt caagaactgt gggcctcacc ccaaccccta ccatgagtgc cccttcctgc
     2101 tgcctccttg attcatccat tctttgggtc cttagagcaa acttgcaggt gctgcatctc
     2161 agtgttaaaa ccagcacagt gtcagtcagc tttctgttac tgtaacaaaa tctccattga
     2221 taaaggttta tcttggctcc tggtaccaat ccatggcctg atttggggag tgggggtggg
     2281 ggtgggggct acagtaagaa catcatggag gagagtgtgt gatagaacag attgctcata
     2341 tgacaggtaa gagagaaggg gagacaagga gcttgggcgc aggtatcacc ttcaaagttc
     2401 tgcctgcagt gagctaactt cctcccacta ggccccattt cttaaaggac ttcccgacac
     2461 attccttccc aacactgaga tgaggtccaa gtctttaaga catttgcctt tgggggacat
     2521 atccaaaccc cttcaaggta accctgacag tgaaaagctg tagagaggta gagggcgaca
     2581 ccagatgctg gagggtgcag gaggctcagg ctttccctga ggcaattagc cagccaagcc
     2641 ctgtagggtg tagggggaag ggagaagcca gcttgccttg tcacagcagg aacaggcaga
     2701 gcttgctgga gctgagcctc gggcagtcag gttagcttct gtgacggttt gcaacttgat
     2761 acataggcct agaaatctga ccagaggaga aggatagtac atgggcctcc tgtctaaact
     2821 atccacccag ggtgcaaata ccaaatttaa atcgccttca gaattagtat ttttaggcca
     2881 aaaatgaacc cataaatctt ggtacagtaa acatcttgat aatgtgattc ctatctagat
     2941 gctcaaggcc attgtggcag tgaaatttct cttgaatgtt gtcattaact ccatcaggca
     3001 gggctcagag tccgatggga aataattttt tggcagagaa tgtctatatt tttttctgta
     3061 ttctgtctca agtttgggga caagcataca gccctgtgtg gaatcctaag tagaatgtga
     3121 caagggatct gcagtgacag ggctcctggg gttggatggg gtcaaatgac tgtcatagtg
     3181 tccctgcctg ctgagggcag gggtgggctt ggctcagaga tgtgtgttcc gtgtctaggc
     3241 agaccacggt gctacacaat ggtatcagta tgtcactgag ttttagacat gttacagttt
     3301 taacttgtat ttctgtattt ttctcaagtg gaataaaatt tcttctgtga aggaaa
//
