LOCUS       NM_001009698            1186 bp    mRNA    linear   ROD 04-JUN-2024
DEFINITION  Rattus norvegicus LysM domain containing 3 (Lysmd3), mRNA.
ACCESSION   NM_001009698 XM_236547 XM_347209
VERSION     NM_001009698.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1186)
  AUTHORS   Serebrenik,Y.V., Hellerschmied,D., Toure,M., Lopez-Giraldez,F.,
            Brookner,D. and Crews,C.M.
  TITLE     Targeted protein unfolding uncovers a Golgi-specific
            transcriptional stress response
  JOURNAL   Mol Biol Cell 29 (11), 1284-1298 (2018)
   PUBMED   29851555
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC088262.1.
            
            On or before Jan 13, 2005 this sequence version replaced
            XM_236547.2, XM_347209.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC088262.1, CO569639.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMD00132264, SAMD00132265
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..1186
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="2"
                     /map="2q11"
     gene            1..1186
                     /gene="Lysmd3"
                     /gene_synonym="RGD1308805"
                     /note="LysM domain containing 3"
                     /db_xref="GeneID:315923"
                     /db_xref="RGD:1308805"
     exon            1..172
                     /gene="Lysmd3"
                     /gene_synonym="RGD1308805"
                     /inference="alignment:Splign:2.1.0"
     exon            173..437
                     /gene="Lysmd3"
                     /gene_synonym="RGD1308805"
                     /inference="alignment:Splign:2.1.0"
     CDS             183..1085
                     /gene="Lysmd3"
                     /gene_synonym="RGD1308805"
                     /note="LysM, putative peptidoglycan-binding, domain
                     containing 3"
                     /codon_start=1
                     /product="lysM and putative peptidoglycan-binding
                     domain-containing protein 3"
                     /protein_id="NP_001009698.1"
                     /db_xref="GeneID:315923"
                     /db_xref="RGD:1308805"
                     /translation="MAGRNQNRTASLAGIQASGHVHTFGNCTDNDMLEEDAEVYELRS
                     RGKEKVRRSTSRDRLDDIVILTKDIQEGDTLNAVALQYCCTVADIKRVNNLISDQDFF
                     ALRSIKIPVKRFSSLTETLHPLKGRQVLHPPPVPYFQEQDTVPANDSPSSSESAGSFL
                     KEVDRDIEQIVKCTDTKKENLNEVVSALTAQQVRFEPDNKSVHRKDPYYGADWGMGWW
                     TAVVIMLIVGIITPVFYLLYYEILAKVDVSHHSTVDSSHLHPGLTPPSHHREMGNAIG
                     PTKGIPVGQQDDHRLYRQDPQARD"
     exon            438..1167
                     /gene="Lysmd3"
                     /gene_synonym="RGD1308805"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ggcggcggct gtcggtgcgg aaggcgggga cggcggcgac agcggcgaag gcggcgacag
       61 tggcagaagc ggacccagac atccgaggac cgggagtcgg tcatgaactt ccccggggcc
      121 gcggctgtgg tggcgtacat aaccgtgtcg ccgcgcccct gctagaagac agatataaca
      181 tcatggcagg aaggaatcag aaccggactg cttccctcgc aggaattcag gccagtggcc
      241 atgtgcacac ctttgggaat tgtacagaca atgacatgtt ggaagaagat gctgaagtct
      301 acgaacttcg gtccagggga aaggagaagg ttcggagaag cacatcgaga gacagacttg
      361 atgacatcgt tatattaacg aaagatatac aggaaggaga tactctgaac gcagtagccc
      421 ttcagtactg ttgtacggta gcagatatca aaagagttaa caatctcatc agtgatcaag
      481 acttttttgc gcttaggtct atcaaaatac cagttaaaag gtttagttct ttgactgaaa
      541 ctcttcatcc tctgaaagga agacaagttt tgcatcctcc acctgttccg tatttccaag
      601 agcaagacac tgtgccagct aacgactctc cttcttccag cgagtcagcc ggcagtttcc
      661 tgaaagaggt ggatcgcgac atagagcaaa tagtcaagtg tacagacacc aagaaggaga
      721 acctgaatga agtagtgtcc gccttaacag cacaacaggt ccgatttgag cctgataaca
      781 aaagcgttca ccgaaaggat ccatattacg gcgcagactg ggggatgggt tggtggacag
      841 ctgtcgtgat aatgttgata gtgggcataa taaccccagt gttttatttg ctgtattatg
      901 agattttagc taaagtggat gttagccacc attccacagt ggactcttcg cacttacatc
      961 caggactcac acctccatca caccacagag agatgggaaa tgcaattggt ccaacaaaag
     1021 gaatacctgt tggccaacag gatgaccaca gactctatag gcaagaccct caggcacgcg
     1081 actgatgctc cacacaaaat gtaacggtga ggggttgggg atttagctca gtggtagagc
     1141 acttcggtcc ccagctccga agaaaaaaaa aaaaaaaaaa aaaaaa
//
