LOCUS       NM_001106839            1257 bp    mRNA    linear   ROD 24-JUN-2024
DEFINITION  Rattus norvegicus LysM domain containing 2 (Lysmd2), mRNA.
ACCESSION   NM_001106839 XM_001059473 XM_217189
VERSION     NM_001106839.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1257)
  AUTHORS   Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
            Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
            Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
            Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
            Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
            Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
            Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
            Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
            Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
            McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
            Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
            Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
            Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
            Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
            Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
            Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
            Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
            Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc Natl Acad Sci U S A 99 (26), 16899-16903 (2002)
   PUBMED   12477932
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000008.1.
            
            On Mar 18, 2021 this sequence version replaced NM_001106839.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC167017.1, CO387531.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760386
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on expression
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-370               JAXUCZ010000008.1  85259795-85260164
            371-702             JAXUCZ010000008.1  85272753-85273084
            703-1257            JAXUCZ010000008.1  85274322-85274876
FEATURES             Location/Qualifiers
     source          1..1257
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="8"
                     /map="8q24"
     gene            1..1257
                     /gene="Lysmd2"
                     /gene_synonym="RGD1304585"
                     /note="LysM domain containing 2"
                     /db_xref="GeneID:300839"
                     /db_xref="RGD:1304585"
     exon            1..370
                     /gene="Lysmd2"
                     /gene_synonym="RGD1304585"
                     /inference="alignment:Splign:2.1.0"
     CDS             98..745
                     /gene="Lysmd2"
                     /gene_synonym="RGD1304585"
                     /note="LysM, putative peptidoglycan-binding, domain
                     containing 2"
                     /codon_start=1
                     /product="lysM and putative peptidoglycan-binding
                     domain-containing protein 2"
                     /protein_id="NP_001100309.2"
                     /db_xref="GeneID:300839"
                     /db_xref="RGD:1304585"
                     /translation="MADLSPAPALREGGPRAHRPSAPSPPLRSRSTSEPEEAELSLSL
                     ARTKTRSYGSTASVRAPLGAGVIERHVEHRVRAGDTLQGIALKYGVTMEQIKRANKLF
                     TNDCIFLKKTLSIPILSEKPLVFNGLNSIDSPESETVDSSFCHEEEPVVSEEELPPPS
                     PQDTDPKPAQPEEVSARDFLQRLDLQIKLSTQAARKLKEENRDEESPYAASLYHS"
     exon            371..702
                     /gene="Lysmd2"
                     /gene_synonym="RGD1304585"
                     /inference="alignment:Splign:2.1.0"
     exon            703..1257
                     /gene="Lysmd2"
                     /gene_synonym="RGD1304585"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ggcacggcca gccgcagccc tagtgaggag gaagaggcgg aggaggaggc gccgccccct
       61 tggcgagctc ggcgccccgg cggccttggc aggacccatg gcggatctct cgcctgcgcc
      121 ggccctgcgg gaaggcggcc cccgtgcgca ccggccctcg gcgccctccc ctccgctgcg
      181 ctctcgctcc acctcggagc ccgaggaggc tgagctgtcg ctgagcctgg cccgcaccaa
      241 gacccgctcg tacggcagca cggccagcgt gcgggcgcct ctgggcgccg gcgtcatcga
      301 gcgccatgtg gagcaccggg tccgcgccgg ggacacgctt cagggcatcg cgctcaagta
      361 cggagtcacg atggaacaga tcaaaagggc caacaaactg tttaccaatg actgtatatt
      421 tctgaagaaa acgctgagca tcccaattct gtcagagaag cctttggtgt ttaatggact
      481 taactccatt gattctccag aaagtgaaac tgttgacagc agtttttgtc atgaagagga
      541 gcctgtagtg tctgaggaag aactaccccc tcccagtcct caggacacgg accccaagcc
      601 tgcgcagcct gaggaagtgt ctgccagaga ttttctgcaa agacttgact tacagattaa
      661 actatcaaca caggcagcca ggaaactcaa agaagagaac agggatgaag agagtcccta
      721 tgctgcttct ctttatcaca gttagtgtct ggccgacgga ctgagccaga tcacagaacg
      781 tctggaccct aaagaatcca ctggccctgc ttcagaagca acgccgctcc tggactccca
      841 tagtgcacct ttgagtagac caactgcagc tgccctgaag tgagcagctc ctctggcttt
      901 ctatagttaa gtcttactag ggcatgacag caacactgta tttattccaa agcctttcac
      961 ttttgtagat ggtggtagtt ttagaccggc ttttgtagat acaaaaggca tcagagactc
     1021 tttatatatt taagccaaaa gctatgttta tttcctgatg agatcctaaa tgtatggaga
     1081 acatggtgat tgtgaagtga taatgcattt gctgtgtgtt tataactcaa gtgatataat
     1141 atatatttca atatcacata ttctgtacta atgtaaagaa ccaaattttg tctgttattt
     1201 tgtaaaagta aactacagat gtctggatga gagaataaac tatgttttca catagga
//
