LOCUS       NM_001024302            2045 bp    mRNA    linear   ROD 30-MAR-2024
DEFINITION  Rattus norvegicus LysM domain containing 1 (Lysmd1), mRNA.
ACCESSION   NM_001024302 XM_574990
VERSION     NM_001024302.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2045)
  AUTHORS   Gerhard,D.S., Wagner,L., Feingold,E.A., Shenmen,C.M., Grouse,L.H.,
            Schuler,G., Klein,S.L., Old,S., Rasooly,R., Good,P., Guyer,M.,
            Peck,A.M., Derge,J.G., Lipman,D., Collins,F.S., Jang,W., Sherry,S.,
            Feolo,M., Misquitta,L., Lee,E., Rotmistrovsky,K., Greenhut,S.F.,
            Schaefer,C.F., Buetow,K., Bonner,T.I., Haussler,D., Kent,J.,
            Kiekhaus,M., Furey,T., Brent,M., Prange,C., Schreiber,K.,
            Shapiro,N., Bhat,N.K., Hopkins,R.F., Hsie,F., Driscoll,T.,
            Soares,M.B., Casavant,T.L., Scheetz,T.E., Brown-stein,M.J.,
            Usdin,T.B., Toshiyuki,S., Carninci,P., Piao,Y., Dudekula,D.B.,
            Ko,M.S., Kawakami,K., Suzuki,Y., Sugano,S., Gruber,C.E.,
            Smith,M.R., Simmons,B., Moore,T., Waterman,R., Johnson,S.L.,
            Ruan,Y., Wei,C.L., Mathavan,S., Gunaratne,P.H., Wu,J., Garcia,A.M.,
            Hulyk,S.W., Fuh,E., Yuan,Y., Sneed,A., Kowis,C., Hodgson,A.,
            Muzny,D.M., McPherson,J., Gibbs,R.A., Fahey,J., Helton,E.,
            Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M.,
            Madari,A., Young,A.C., Wetherby,K.D., Granite,S.J., Kwong,P.N.,
            Brinkley,C.P., Pearson,R.L., Bouffard,G.G., Blakesly,R.W.,
            Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J.,
            Myers,R.M., Butterfield,Y.S., Griffith,M., Griffith,O.L.,
            Krzywinski,M.I., Liao,N., Morin,R., Palmquist,D., Petrescu,A.S.,
            Skalska,U., Smailus,D.E., Stott,J.M., Schnerch,A., Schein,J.E.,
            Jones,S.J., Holt,R.A., Baross,A., Marra,M.A., Clifton,S.,
            Makowski,K.A., Bosak,S. and Malek,J.
  CONSRTM   MGC Project Team
  TITLE     The status, quality, and expansion of the NIH full-length cDNA
            project: the Mammalian Gene Collection (MGC)
  JOURNAL   Genome Res 14 (10B), 2121-2127 (2004)
   PUBMED   15489334
  REMARK    Erratum:[Genome Res. 2006 Jun;16(6):804. Morrin, Ryan [corrected to
            Morin, Ryan]]
REFERENCE   2  (bases 1 to 2045)
  AUTHORS   Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
            Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
            Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
            Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
            Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
            Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
            Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
            Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
            Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
            McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
            Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
            Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
            Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
            Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
            Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
            Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
            Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
            Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc Natl Acad Sci U S A 99 (26), 16899-16903 (2002)
   PUBMED   12477932
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000002.1.
            
            On Mar 10, 2021 this sequence version replaced NM_001024302.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC089113.1, SRR26360172.1588204.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760386
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-658               JAXUCZ010000002.1  185394145-185394802
            659-1023            JAXUCZ010000002.1  185397688-185398052
            1024-2045           JAXUCZ010000002.1  185398424-185399445
FEATURES             Location/Qualifiers
     source          1..2045
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="2"
                     /map="2q34"
     gene            1..2045
                     /gene="Lysmd1"
                     /note="LysM domain containing 1"
                     /db_xref="GeneID:499671"
                     /db_xref="RGD:1561865"
     exon            1..658
                     /gene="Lysmd1"
                     /inference="alignment:Splign:2.1.0"
     CDS             479..1162
                     /gene="Lysmd1"
                     /note="LysM, putative peptidoglycan-binding, domain
                     containing 1"
                     /codon_start=1
                     /product="lysM and putative peptidoglycan-binding
                     domain-containing protein 1"
                     /protein_id="NP_001019473.1"
                     /db_xref="GeneID:499671"
                     /db_xref="RGD:1561865"
                     /translation="MASPSRQPPLGGSGLLRGSRARSYGSLVQSSCSPVRERRLEHQL
                     EPGDTLAGLALKYGVTMEQIKRTNRLYTNDSIFLKKTLYIPILTEPRDLFNGLDSEEE
                     ENDGEEEVRPSKDEIGSSSGKRKNQGSASSQPKGTGLPPHQGTSTPSHDLSASDFLKK
                     LDSQISLSKKAAAQKLRKGESGVPEEDTGLYPSSPRMQQRAVLGPVPLTRTSRTQTLR
                     DQEDEIFKL"
     exon            659..1023
                     /gene="Lysmd1"
                     /inference="alignment:Splign:2.1.0"
     exon            1024..2045
                     /gene="Lysmd1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ctcaggctcg tcctcctcag ccacaaccta cctggggtgg gttttatttg gaacagagag
       61 gatgtggggg ctcccggcgt cctgactgtt ggatgtaggg acacactgag ggaagagtgt
      121 taatgagggt gtctagggtt caaaggtcag agatcaggct tgcgaggagt tggggagggg
      181 gcgtcgaaag tccacggggt cagcgactga caactcaggg aagatattta tgggtaaggg
      241 gcttgaggaa gaagaaatgt aaccggcctg gaagacttct taagatacga actgtaattc
      301 cgagctccgt aagaagcatc gagaggagga ggacgaatgt agtctctcga gagtcgggag
      361 actgaagaga aaagagaaaa agaattttct gaatatccat tctctgggtt cagccgtcac
      421 tgttggtcac ttagctgggc tttcctcagt tgtgacccta gatcttggaa gtgaggagat
      481 ggcttcgccc tctagacagc ctcccctcgg agggtcaggg ctgctacgtg ggagccgtgc
      541 tcgttcttat ggaagcctgg tacaatcatc ctgctcccca gtgagggaaa gacgcctgga
      601 gcatcaattg gagcctggag acaccctggc tggattagca ctcaaatacg gggtgacgat
      661 ggagcagatt aaacgtacaa accgccttta tactaacgac tccatcttcc tgaagaaaac
      721 gctctacatc cccatcctga cagagcccag agacctgttt aatggtttag attctgagga
      781 ggaggaaaat gatggagagg aagaggttcg cccgagtaag gatgagattg gttcatcttc
      841 agggaagagg aagaatcaag ggtcagcctc gagtcagccc aaaggcacag gcctcccacc
      901 tcaccaggga acctccacac ccagccatga cctttctgcc tctgatttcc ttaagaagct
      961 tgactcacag atcagcctgt cgaagaaggc tgctgcccag aagctgagga aaggggaaag
     1021 tggggtacct gaggaggata caggtctcta ccccagctcc cctcggatgc agcagcgagc
     1081 agtcctgggt cctgtgccac tcacccggac gtctcgaacc cagacactgc gggaccagga
     1141 agatgaaatc ttcaaactct gatgtcccca gaactgatga gcgcagcaga atgtttaagg
     1201 aacagctcaa ggaggaggag tctgaggtga ggctcaagag cagtgctccc agcctgcctc
     1261 actcctctcc agccatcttg cccagcctct ttgtcaggat ttcctcagcg gggtacactt
     1321 tttggcaagc gtaaggggtg ggagcatttc ttgggctgaa tctagagtta tcctttagat
     1381 tcaaaggctc ttttatgccc ttgctgtccc tttcaccatt ccctggcctt acacagggaa
     1441 gcagagaccc ctcccctatc tccaatgatc ttacctaatt tatttggtgc tatgttgaag
     1501 taatatttat ttgctctatc taactctttt ctcctcttaa gtgagggggg ctgggatttc
     1561 catatcactg aggacaggga gacccagaat gtaagtggag tcggctgtct gctcgcctct
     1621 cccagtgaag catgttacgg aggccagagt caggaagctc accacagagt ggcagaccaa
     1681 gctaaagggt aggggctaag taactccccg atacttttta cacctcctgg ctgagtgagc
     1741 acccttcttc cctctcctct cctcagtgtg tggaggggct gaggagagga agatgctctg
     1801 gggttcctag gaggacagtt gcacaagtgt ctttgttaca caccctagcc tgcctctgcc
     1861 ttgctcctca cttcttattt agctgtaatc agtttgtctt tggttcctta agtgaagaaa
     1921 caggcactgg gagtctgccg tcgcctgttg aggagtgggg ctcatgagat aagtgttgtt
     1981 tctagacctc tcctctgttt agcctgagtg tggagcttga gagattaaac agtgagccct
     2041 gtgca
//
