LOCUS       NM_001173471            1575 bp    mRNA    linear   ROD 10-FEB-2025
DEFINITION  Rattus norvegicus LYR motif containing 9 (Lyrm9), mRNA.
ACCESSION   NM_001173471 XM_001080895 XM_579762
VERSION     NM_001173471.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1575)
  AUTHORS   Morgenstern,M., Peikert,C.D., Lubbert,P., Suppanz,I., Klemm,C.,
            Alka,O., Steiert,C., Naumenko,N., Schendzielorz,A., Melchionda,L.,
            Muhlhauser,W.W.D., Knapp,B., Busch,J.D., Stiller,S.B.,
            Dannenmaier,S., Lindau,C., Licheva,M., Eickhorst,C., Galbusera,R.,
            Zerbes,R.M., Ryan,M.T., Kraft,C., Kozjak-Pavlovic,V., Drepper,F.,
            Dennerlein,S., Oeljeklaus,S., Pfanner,N., Wiedemann,N. and
            Warscheid,B.
  TITLE     Quantitative high-confidence human mitochondrial proteome and its
            dynamics in cellular context
  JOURNAL   Cell Metab 33 (12), 2464-2483 (2021)
   PUBMED   34800366
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000010.1.
            
            On or before May 13, 2010 this sequence version replaced
            XM_579762.3, XM_001080895.2.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643292.42061.1,
                                           SRR26643288.42109.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760386
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-48                JAXUCZ010000010.1  64223763-64223810
            49-189              JAXUCZ010000010.1  64232819-64232959
            190-282             JAXUCZ010000010.1  64234965-64235057
            283-1575            JAXUCZ010000010.1  64236499-64237791
FEATURES             Location/Qualifiers
     source          1..1575
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="10"
                     /map="10q25"
     gene            1..1575
                     /gene="Lyrm9"
                     /gene_synonym="RGD1562012"
                     /note="LYR motif containing 9"
                     /db_xref="GeneID:497962"
                     /db_xref="RGD:1562012"
     exon            1..48
                     /gene="Lyrm9"
                     /gene_synonym="RGD1562012"
                     /inference="alignment:Splign:2.1.0"
     exon            49..189
                     /gene="Lyrm9"
                     /gene_synonym="RGD1562012"
                     /inference="alignment:Splign:2.1.0"
     CDS             64..300
                     /gene="Lyrm9"
                     /gene_synonym="RGD1562012"
                     /note="UPF0631 protein C17orf108 homolog"
                     /codon_start=1
                     /product="LYR motif-containing protein 9"
                     /protein_id="NP_001166942.1"
                     /db_xref="GeneID:497962"
                     /db_xref="RGD:1562012"
                     /translation="MAPLRGAELVQTPLQLYRYLLRCCRQLPTKGIQEHYKHAVRQSF
                     QVHSDEDNPERIQQIIRRAIEDADWIMNKYKKQN"
     exon            190..282
                     /gene="Lyrm9"
                     /gene_synonym="RGD1562012"
                     /inference="alignment:Splign:2.1.0"
     exon            283..1575
                     /gene="Lyrm9"
                     /gene_synonym="RGD1562012"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 aatcgtgtcg ctcgcggtgt ctcgagttgg cgtccgccgg gaaggcgggg ctggggctcg
       61 cacatggccc ctctgcgggg ggcggagctg gtccagacgc cgttgcagct gtaccgttac
      121 ttactgcgtt gctgccggca gctgccaacc aagggcatcc aggagcacta caagcacgcc
      181 gtcaggcaga gtttccaagt tcactcagac gaagacaacc ccgagagaat ccagcagatt
      241 attagaagag ccattgaaga tgccgactgg atcatgaaca agtataagaa acaaaactga
      301 gtacctggag ctcacagcga gagcacagcc gccccggaga cacgtgggac tgagagacct
      361 ctctgctttt ggaactacag agcagcatca gttctggagt agtctttgat cttgttgact
      421 gaaagcagaa atcatagctg acatttggtc aggtggtttc tcatcattgc agccatgtcc
      481 ccagcatctt ttatgtctgc ttttccagac agaaacgata cacaatttgg ggagaatttg
      541 gtgttttttt gcttcttctc tgtgtttcta atttttgcct atctgttctt ttactttgct
      601 ctgaaggcaa ttaatttatt ctggaggtcc cgttaccgac ctctgagccc cagaagggat
      661 gtcccctcag atgaccacct gtataggaga aaaagaacag gcttgagaac caggcagctg
      721 tggatctgaa tcccagccag ggtacacagc ttctgactgg cgcctcctgg gtgagcccgg
      781 gtgtggtgac agtgagatgc ctcacactgg cttcgtgcac agtgaccgtg caaggaagcc
      841 gccgtgctgc ccttccccag ctccttgtcc tcttcagtga ctcagctgtg aggtcgtctt
      901 gttccctctc agagtcccac aagccctcta tttgtgccat gctgcgtcca tcagtcagtt
      961 ctacctgaca ttccctccca acatgctcaa agcagaagcc ctgatcctta cggtggggaa
     1021 acatctaccg aggtgcaagc agccagggta gacaccagca ggtccaggct ctgcgccaca
     1081 gtgtgtcctc acaggagagg agagcaggtc ctgggagaag tggcccaagt gggcgaagta
     1141 gcctgaagat gcagagaagc cacactggga ttgagtattt gtgcagcact cagccagcag
     1201 gaagagctag cgcctgcctg tgtccttgta ctatgcaggg tgatgtgacc tctgtctatg
     1261 cagaggtggc tgacagtcct gaagcacgtg tgtccagttg tgaaagctca gagttttctt
     1321 cctcctcttt ttatttcctt gtgtaccctg gcaggtcttg aacttttgaa ctttcagcac
     1381 tttctctctc tgcctcccag acacttagat gcaggtgtgt cacagcagcc tgctgctgct
     1441 gccgctgctg ctactcctgc tgccactgct gcctcgttgt tgttgttctt cttcttcctc
     1501 ttattacatg tatgtatttg tgtgtgtaca catgtgagaa tatgcaagcc acgataaatg
     1561 ttcgagtcag gacaa
//
