LOCUS       NM_001276487            1242 bp    mRNA    linear   ROD 20-SEP-2024
DEFINITION  Rattus norvegicus LYR motif containing 1 (Lyrm1), mRNA.
ACCESSION   NM_001276487
VERSION     NM_001276487.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1242)
  AUTHORS   Morgenstern,M., Peikert,C.D., Lubbert,P., Suppanz,I., Klemm,C.,
            Alka,O., Steiert,C., Naumenko,N., Schendzielorz,A., Melchionda,L.,
            Muhlhauser,W.W.D., Knapp,B., Busch,J.D., Stiller,S.B.,
            Dannenmaier,S., Lindau,C., Licheva,M., Eickhorst,C., Galbusera,R.,
            Zerbes,R.M., Ryan,M.T., Kraft,C., Kozjak-Pavlovic,V., Drepper,F.,
            Dennerlein,S., Oeljeklaus,S., Pfanner,N., Wiedemann,N. and
            Warscheid,B.
  TITLE     Quantitative high-confidence human mitochondrial proteome and its
            dynamics in cellular context
  JOURNAL   Cell Metab 33 (12), 2464-2483 (2021)
   PUBMED   34800366
REFERENCE   2  (bases 1 to 1242)
  AUTHORS   Pagliarini,D.J., Calvo,S.E., Chang,B., Sheth,S.A., Vafai,S.B.,
            Ong,S.E., Walford,G.A., Sugiana,C., Boneh,A., Chen,W.K., Hill,D.E.,
            Vidal,M., Evans,J.G., Thorburn,D.R., Carr,S.A. and Mootha,V.K.
  TITLE     A mitochondrial protein compendium elucidates complex I disease
            biology
  JOURNAL   Cell 134 (1), 112-123 (2008)
   PUBMED   18614015
REFERENCE   3  (bases 1 to 1242)
  AUTHORS   Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
            Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
            Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
            Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
            Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
            Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
            Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
            Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
            Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
            McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
            Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
            Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
            Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
            Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
            Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
            Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
            Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
            Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc Natl Acad Sci U S A 99 (26), 16899-16903 (2002)
   PUBMED   12477932
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000001.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC166909.1, CB312881.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760386
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-65                JAXUCZ010000001.1  183716538-183716602
            66-256              JAXUCZ010000001.1  183729651-183729841
            257-349             JAXUCZ010000001.1  183733784-183733876
            350-1242            JAXUCZ010000001.1  183735514-183736406
FEATURES             Location/Qualifiers
     source          1..1242
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /map="1q35"
     gene            1..1242
                     /gene="Lyrm1"
                     /gene_synonym="RGD1563498"
                     /note="LYR motif containing 1"
                     /db_xref="GeneID:365361"
                     /db_xref="RGD:1563498"
     exon            1..65
                     /gene="Lyrm1"
                     /gene_synonym="RGD1563498"
                     /inference="alignment:Splign:2.1.0"
     exon            66..256
                     /gene="Lyrm1"
                     /gene_synonym="RGD1563498"
                     /inference="alignment:Splign:2.1.0"
     CDS             98..466
                     /gene="Lyrm1"
                     /gene_synonym="RGD1563498"
                     /codon_start=1
                     /product="LYR motif-containing protein 1"
                     /protein_id="NP_001263416.1"
                     /db_xref="GeneID:365361"
                     /db_xref="RGD:1563498"
                     /translation="MTAASRQEVLGLYRSIFRLARKWQAASGQMEDTIKEKQYILNEA
                     RTLFQKNKNLTDPDLIKQCIDECTARIEIGLHYQIPYPRPIHLPPMGLTPRRGRGLQT
                     QEKLRKFSKPLYLKSHDEVS"
     exon            257..349
                     /gene="Lyrm1"
                     /gene_synonym="RGD1563498"
                     /inference="alignment:Splign:2.1.0"
     exon            350..1242
                     /gene="Lyrm1"
                     /gene_synonym="RGD1563498"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ggcggggaca ggaacgagga aggtgacgcc acgacgtacg cggggacgtc cgaagccgtc
       61 tccaagtctt cctcccctta ctctggtggg tctgaagatg acagcagcaa gccgacaaga
      121 agtcctcggc ctctaccgaa gcattttcag gcttgcacgg aaatggcagg cagcatcagg
      181 gcagatggaa gacaccatca aagaaaaaca gtacatacta aatgaagcca gaacactgtt
      241 ccagaaaaac aaaaatctca cagacccaga cttaattaaa cagtgtatag acgaatgtac
      301 agccaggatt gagattggac tgcattacca gattccttat cccagaccga tccatctacc
      361 cccaatgggt ctcaccccac gacgaggccg gggacttcaa acccaggaga aactaagaaa
      421 attttccaaa ccactgtatc tgaagtctca tgatgaagtt tcctaacaaa gaagacactt
      481 tactttttag aatggtgagc caactcggtt ttgaatataa acaaggcaat ataccctcct
      541 tgattagaag caaaatactt ttcagacctc caaaattggt cttcacctat gacatgtggc
      601 tgcaggcatc cctagggttt ttcggggtct tgctgctgct tgagctgatg gacttcacat
      661 cttccctgat gtcatccttg ggagctgtct gaggcctgtg gggaagactg aaggcaattc
      721 ctgggcggcc tttcagcaca catctgatgc agagggatta gctagttgcc gcaagttcac
      781 atggctccaa aactgctctg ctcccaaaat actttataga gtttttttcc acaagttatt
      841 ttcatttgat taaaactggt ttctgtgtgg gctttttctg tgatctcctg actcttgtaa
      901 tttccaaatt tatcccttta taaagggcag ctttggattg atcatgcttc tttgttgttt
      961 tgttggattt tgtgtgtgtg gaggggattg ttttgagaca gggatttcct atgtagcact
     1021 tgctggctta gaactctcta tgtagactag accttgtgtt gacctcctgc ttcagcttct
     1081 caagtactaa aattatagac acgagtcact aaactgaact gatcatgtga tctttttaat
     1141 ggaaatatga tataacaccc ctctccctga tgataaatga aagtacatgc cttaattaaa
     1201 catgtgttta ttttaaaata aactgtgatt acttaagatg ca
//
