LOCUS       NM_001419311            1013 bp    mRNA    linear   ROD 01-APR-2024
DEFINITION  Rattus norvegicus Ly6/Plaur domain containing 8 (Lypd8), mRNA.
ACCESSION   NM_001419311 XM_006246402
VERSION     NM_001419311.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1013)
  AUTHORS   Okumura,R., Kurakawa,T., Nakano,T., Kayama,H., Kinoshita,M.,
            Motooka,D., Gotoh,K., Kimura,T., Kamiyama,N., Kusu,T., Ueda,Y.,
            Wu,H., Iijima,H., Barman,S., Osawa,H., Matsuno,H., Nishimura,J.,
            Ohba,Y., Nakamura,S., Iida,T., Yamamoto,M., Umemoto,E., Sano,K. and
            Takeda,K.
  TITLE     Lypd8 promotes the segregation of flagellated microbiota and
            colonic epithelia
  JOURNAL   Nature 532 (7597), 117-121 (2016)
   PUBMED   27027293
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000010.1.
            
            On Mar 30, 2023 this sequence version replaced XM_006246402.4.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643288.40850.1, BP503509.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN16418986 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-56                JAXUCZ010000010.1  43062261-43062316
            57-159              JAXUCZ010000010.1  43065186-43065288
            160-273             JAXUCZ010000010.1  43065662-43065775
            274-432             JAXUCZ010000010.1  43067691-43067849
            433-567             JAXUCZ010000010.1  43069911-43070045
            568-1013            JAXUCZ010000010.1  43072663-43073108
FEATURES             Location/Qualifiers
     source          1..1013
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="10"
                     /map="10q22"
     gene            1..1013
                     /gene="Lypd8"
                     /note="Ly6/Plaur domain containing 8"
                     /db_xref="GeneID:691259"
                     /db_xref="RGD:1586251"
     exon            1..56
                     /gene="Lypd8"
                     /inference="alignment:Splign:2.1.0"
     exon            57..159
                     /gene="Lypd8"
                     /inference="alignment:Splign:2.1.0"
     CDS             105..854
                     /gene="Lypd8"
                     /note="ly6/PLAUR domain-containing protein 8"
                     /codon_start=1
                     /product="ly6/PLAUR domain-containing protein 8 precursor"
                     /protein_id="NP_001406240.1"
                     /db_xref="GeneID:691259"
                     /db_xref="RGD:1586251"
                     /translation="MKGVFIAGVIAAFAITVVDSLDCAQCHTYNSTCEANATACAAGS
                     LSCVESSVNSTLGGFLHLYQNKFCSASNCSENSTEVAFTVRVFDNQRYRFASQCCQEK
                     ECNGTHYEPETQDSTGMQCVSCYNNNNTNCIEKLQECYKGEQCVRIIMELKNGSGKVE
                     LKGCSDISNSTCQLLSAGNVTVGEFIFKSVQCTNLANITSPTTVIPQTTSTPRATVTS
                     QTSVTPSTSMGIKASFASSIFGSLLLLKLLL"
     exon            160..273
                     /gene="Lypd8"
                     /inference="alignment:Splign:2.1.0"
     exon            274..432
                     /gene="Lypd8"
                     /inference="alignment:Splign:2.1.0"
     exon            433..567
                     /gene="Lypd8"
                     /inference="alignment:Splign:2.1.0"
     exon            568..1013
                     /gene="Lypd8"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 aacccattgc caggttccgt cttcctccgg atagtgttcc tggctggatc cagaaggttt
       61 gaggctctgt ggccccatcc tctggggaag ccagccccag catcatgaaa ggcgtcttca
      121 ttgctggtgt cattgcggca tttgccatca cagtcgtaga ctccctggat tgtgcacagt
      181 gtcacacata caatagcacc tgtgaagcca atgccactgc atgcgcagca ggatccctaa
      241 gttgtgtgga gtcctctgtc aactccactc taggagggtt cctccatttg taccagaaca
      301 agttctgctc tgcatcgaat tgcagcgaga acagcacgga ggtggccttc actgtgcgcg
      361 tatttgataa ccaaagatac cgttttgcaa gccagtgctg ccaggaaaag gaatgcaacg
      421 gcacccacta tgaacctgaa acacaggact ccactggcat gcagtgtgtg tcttgctata
      481 acaacaacaa cacaaactgc atagagaaac tccaggagtg ctacaaagga gaacaatgtg
      541 tccgtatcat tatggagctt aaaaatggca gtggcaaggt ggagctgaag ggctgttctg
      601 atatcagcaa ctctacttgt caactcctgt ctgctgggaa cgtaacagtt ggagagttca
      661 ttttcaagtc ggttcaatgt acgaacctgg caaacattac ctcaccgacc accgttatcc
      721 cacagaccac cagtactcca cgagccaccg ttacttcaca aacctccgtt accccatcga
      781 ccagcatggg catcaaagct tcctttgctt cctctatctt tgggagcctc cttcttctga
      841 agctgctgct ctgaggtcct tgggctctgc cccatccagt gtcgcaggga tgtaaacact
      901 tttctcttca cataccttcc agttaaattg ttcagtgggt tgaaagtcac agactccagg
      961 caatgttagc agccacgttc gctcctttat taaagtgttg cttgaggtct aga
//
