LOCUS       NM_001395757            2937 bp    mRNA    linear   ROD 28-MAR-2024
DEFINITION  Rattus norvegicus Ly6/Plaur domain containing 6B (Lypd6b), mRNA.
ACCESSION   NM_001395757 XM_017591886
VERSION     NM_001395757.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2937)
  AUTHORS   Ochoa,V., George,A.A., Nishi,R. and Whiteaker,P.
  TITLE     The prototoxin LYPD6B modulates heteromeric alpha3beta4-containing
            nicotinic acetylcholine receptors, but not alpha7 homomers
  JOURNAL   FASEB J 30 (3), 1109-1119 (2016)
   PUBMED   26586467
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000003.1.
            
            On Aug 6, 2021 this sequence version replaced XM_017591886.2.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            CDS exon combination :: CB605871.1, SRR26360194.2059759.1
                                    [ECO:0000331]
            RNAseq introns       :: single sample supports all introns
                                    SAMEA5760433, SAMN12840105 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            inferred exon combination :: based on alignments, homology
            RefSeq Select criteria    :: based on conservation, expression,
                                         longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-586               JAXUCZ010000003.1  54608320-54608905
            587-658             JAXUCZ010000003.1  54719748-54719819
            659-842             JAXUCZ010000003.1  54741646-54741829
            843-902             JAXUCZ010000003.1  54750300-54750359
            903-999             JAXUCZ010000003.1  54757444-54757540
            1000-1245           JAXUCZ010000003.1  54760741-54760986
            1246-1344           JAXUCZ010000003.1  54761919-54762017
            1345-1475           JAXUCZ010000003.1  54766848-54766978
            1476-2937           JAXUCZ010000003.1  54768513-54769974
FEATURES             Location/Qualifiers
     source          1..2937
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /map="3q12"
     gene            1..2937
                     /gene="Lypd6b"
                     /gene_synonym="RGD1562767"
                     /note="Ly6/Plaur domain containing 6B"
                     /db_xref="GeneID:362133"
                     /db_xref="RGD:1562767"
     exon            1..586
                     /gene="Lypd6b"
                     /gene_synonym="RGD1562767"
                     /inference="alignment:Splign:2.1.0"
     exon            587..658
                     /gene="Lypd6b"
                     /gene_synonym="RGD1562767"
                     /inference="alignment:Splign:2.1.0"
     exon            659..842
                     /gene="Lypd6b"
                     /gene_synonym="RGD1562767"
                     /inference="alignment:Splign:2.1.0"
     exon            843..902
                     /gene="Lypd6b"
                     /gene_synonym="RGD1562767"
                     /inference="alignment:Splign:2.1.0"
     exon            903..999
                     /gene="Lypd6b"
                     /gene_synonym="RGD1562767"
                     /inference="alignment:Splign:2.1.0"
     exon            1000..1245
                     /gene="Lypd6b"
                     /gene_synonym="RGD1562767"
                     /inference="alignment:Splign:2.1.0"
     CDS             1131..1649
                     /gene="Lypd6b"
                     /gene_synonym="RGD1562767"
                     /note="ly6/PLAUR domain-containing protein 6B"
                     /codon_start=1
                     /product="ly6/PLAUR domain-containing protein 6B
                     precursor"
                     /protein_id="NP_001382686.1"
                     /db_xref="GeneID:362133"
                     /db_xref="RGD:1562767"
                     /translation="MLLLCHILAVTILQILVISENWVFAKNINFYNVRPPLDPTPFPN
                     SFKCFTCENAGDNYNCNRWAEDKWCPQETQYCLTVHHFTSHGRSTSITKKCASKNECH
                     FVGCRHSRDSEHTECRSCCEGMICNVELPTNHTNAVFAVMHAQRTSGSSVSNVPRSYL
                     PVLAWLFMLPLL"
     exon            1246..1344
                     /gene="Lypd6b"
                     /gene_synonym="RGD1562767"
                     /inference="alignment:Splign:2.1.0"
     exon            1345..1475
                     /gene="Lypd6b"
                     /gene_synonym="RGD1562767"
                     /inference="alignment:Splign:2.1.0"
     exon            1476..2937
                     /gene="Lypd6b"
                     /gene_synonym="RGD1562767"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gggatttatc tacagagaag caaggttgga tttacaatcc agagttgcgg aggacatagc
       61 aatagaaaat tatcttacta acacgaggga aagccgacgt tttagagata ggtgaagcct
      121 gtaaggggta ggaccgaacg gtctaaaagg cccgagttct gtttctcaag cagttgtact
      181 ctttgcctca cagttttcac cccggagtga ctctagcatc tatgagggcg gcagtgtccc
      241 tctagctgct ccgagcgggg tctgtgctct tttcccagcc cgccaggcta ggtgggaaca
      301 gctcctcctg cacgggtgca ttaagcaacc tactcgcatt caccgggctt cgtgccactg
      361 ggcgcaggac ccaggcggcg tccccaagcc ggcacccggg ctgctccccc acgtgtggag
      421 ctcacctgtc ggcccgcctc tcccggacgc cccaggtggc tcggggttgg gaggagccac
      481 gccccgcccg gcgcggtcac agtcatcgcc agcccggagc gggtgcctgg agcccaggcc
      541 gggaaccgag cgaggcgccg ggagccggcc ggcagcgact gtgcagactg gctacttcgt
      601 ttgatgcaga cctgttccct gcggcttaga gactgactac caggctgtct ttcttaagct
      661 gtgtaacctt gggcaagttg ctatcctctc tctgaacttc agactcctcc tgtgtgaatt
      721 ggggataata atagctccca cctggctgtg ctgtgacgat tacatgattc attgcgtcgg
      781 gcgtctgact cttacaaagc ctcaatgaat gctaacttaa aatggaagtt actctacatg
      841 aggtgtgctt gaatgagaga agcaaggaat agaagaagag gaggaagact tgggtgagga
      901 aggaacaaca aacaagacaa gggatttggg aatgtctcaa cagacacaaa acatttgcgg
      961 ttttgttcaa cttgattttc ctggatccgg atctttatgg tggaataatt gacctttccg
     1021 tgcagaagca gaacatacct cttgttgacg tctaaaacca aatgagctga cccagtccgt
     1081 gttttcatgg cagacacacg actttgacct gcccagtcaa ggagttcaga atgctgctcc
     1141 tctgccacat tctagccgtg accatccttc agatcttggt catctcagaa aactgggtgt
     1201 ttgctaagaa catcaacttc tacaatgtga ggccccctct cgaccccacg ccattcccaa
     1261 acagtttcaa gtgttttact tgtgaaaatg caggggataa ttataactgc aatcgatggg
     1321 cagaagacaa gtggtgtccg caggaaacac agtattgttt gacagttcat cacttcacca
     1381 gccacggaag aagtacgtcc atcactaaaa agtgtgcctc taaaaatgaa tgtcattttg
     1441 ttggctgccg acatagccga gattcggaac acacggagtg taggtcttgc tgtgaaggaa
     1501 tgatctgcaa tgtagagttg cccaccaacc atacaaatgc agtctttgcg gtgatgcacg
     1561 cgcagaggac atctggcagc agtgtctcca atgtccccag atcctatctc ccagtgctgg
     1621 cctggctctt catgcttccc ttgctgtgat gctgctgtcc ccaagagaag cagagaccat
     1681 caatgtaaag cacagaaaga gtggaccagc ggactctgga gccaaggtcc atcttgcact
     1741 tgataaagaa gatactttgg actgcaaagt agaaggcaaa ggtttgcttt gctgaaatgc
     1801 tcctgcatgg ggtcacagca ctgggcatga ggacttggta ggaaccaaga ggactacgta
     1861 acttccagtg tcctggtcta cggatgctgc attctgtcag ctctacaggg gatccgacca
     1921 gtatcgttga cagcaacagt aagccctggc ctgaccaggc cttcccctgg aacgactttt
     1981 tgacctcatg gactccctca gaggctgctg ggtcagactc tctggtttct gtgactagct
     2041 cagagcatct ctgaaatgta acccttctgc ccacgggaaa gcagtcctta ctgtgttaat
     2101 gttcttttcc tgttaacaag tacctgagac gatccgttta taaagataaa tggtttgttt
     2161 gggctcacgg ttttggagat tgcagtatat actagtttgg ggcctgtgtt ggagagcaag
     2221 tagccactca taatggaaac tcgaaagggg gagaggatgg gctggagaga tgcttcagca
     2281 gttaaggggc agtgactgat ctcctggaag acccaagttt gattctcagc actcacatag
     2341 gagctcacaa ttgataattc caatgccagg agatccaatg ctctcttctg gcctctgagt
     2401 actgcagaca ggtggtgcaa acatatatgc aggtaaaaca cccatataaa taattcttca
     2461 ttataaaggg aaaggaagaa aaaaaagaaa gaagcagagg tgggaaagag agcatgcaca
     2521 taagattccc caataccctt caaggtcatg ttcccaacat cctaaatcct ccaactagat
     2581 cccatttcct aaaggttcaa ttacctcctt aatggcatca gtaggctgag gaccaaaact
     2641 ttaaccctgt aacagtcaag atccaaacaa tagtacatac taaccaccta gttgatgaaa
     2701 aagctgtagg agggaaatat ccagttaaaa ttctatgatt ccatttgcca attatgagat
     2761 ggttgggggt ggggtgcaaa cctttgaatt atatagtgta atgcatgctg tgtgtttctt
     2821 gacaatgtgg aggcctctaa tgaagtacat ttaccaatgt cattaaattt gtgtttccag
     2881 gaaccatggg tgatacatgc tgtttaaaag aataaaattt tatgctgatg tgattta
//
