LOCUS       NM_001419682            3640 bp    mRNA    linear   ROD 01-APR-2024
DEFINITION  Rattus norvegicus Ly6/Plaur domain containing 6 (Lypd6), mRNA.
ACCESSION   NM_001419682 XM_006234160
VERSION     NM_001419682.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3640)
  AUTHORS   Arvaniti,M., Jensen,M.M., Soni,N., Wang,H., Klein,A.B., Thiriet,N.,
            Pinborg,L.H., Muldoon,P.P., Wienecke,J., Imad Damaj,M.,
            Kohlmeier,K.A., Gondre-Lewis,M.C., Mikkelsen,J.D. and Thomsen,M.S.
  TITLE     Functional interaction between Lypd6 and nicotinic acetylcholine
            receptors
  JOURNAL   J Neurochem 138 (6), 806-820 (2016)
   PUBMED   27344019
REFERENCE   2  (bases 1 to 3640)
  AUTHORS   Darvas,M., Morsch,M., Racz,I., Ahmadi,S., Swandulla,D. and
            Zimmer,A.
  TITLE     Modulation of the Ca2+ conductance of nicotinic acetylcholine
            receptors by Lypd6
  JOURNAL   Eur Neuropsychopharmacol 19 (9), 670-681 (2009)
   PUBMED   19403274
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000003.1.
            
            On Apr 13, 2023 this sequence version replaced XM_006234160.4.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643287.7785.1,
                                           SRR26643298.15771.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760393, SAMEA5760433
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on manual assertion, conservation,
                                      expression, longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-121               JAXUCZ010000003.1  54896618-54896738
            122-310             JAXUCZ010000003.1  55014402-55014590
            311-409             JAXUCZ010000003.1  55021429-55021527
            410-540             JAXUCZ010000003.1  55036967-55037097
            541-3640            JAXUCZ010000003.1  55038829-55041928
FEATURES             Location/Qualifiers
     source          1..3640
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /map="3q12"
     gene            1..3640
                     /gene="Lypd6"
                     /note="Ly6/Plaur domain containing 6"
                     /db_xref="GeneID:679564"
                     /db_xref="RGD:1587119"
     exon            1..121
                     /gene="Lypd6"
                     /inference="alignment:Splign:2.1.0"
     exon            122..310
                     /gene="Lypd6"
                     /inference="alignment:Splign:2.1.0"
     CDS             193..708
                     /gene="Lypd6"
                     /note="LY6/PLAUR domain containing 6B-like; ly6/PLAUR
                     domain-containing protein 6"
                     /codon_start=1
                     /product="ly6/PLAUR domain-containing protein 6 precursor"
                     /protein_id="NP_001406611.1"
                     /db_xref="GeneID:679564"
                     /db_xref="RGD:1587119"
                     /translation="MEPSPALAWLLLLSLVADCLKAAQSRDFTVKDIIYLHPSTTPYP
                     GGFKCFTCEKAADNYECNRWAPDIYCPRDTRYCYTQHTMEVTGNSISVTKRCVPLEEC
                     LSTGCRDSEHEGYKICTSCCEGNICNLPLPRNDTDATFATTSPINQTNGHPHCVSVIV
                     SCLWVWLGLTL"
     exon            311..409
                     /gene="Lypd6"
                     /inference="alignment:Splign:2.1.0"
     exon            410..540
                     /gene="Lypd6"
                     /inference="alignment:Splign:2.1.0"
     exon            541..3640
                     /gene="Lypd6"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ctgcgctccc ggctcgggcc gcgcgcaggc ggcgctccgc attgcacacg cgggggtcgc
       61 cgcagtgttc gtgggatggg gcagcgggct gcctctggtg gcagggacgc gtgcagcccg
      121 ggtgccaatc ctctaccacg gtctcaagtg ccccctctga ggccctctgt atgagtgaca
      181 cgccagtcgg ccatggaacc cagccctgcc ctggcctggc tcctgctgct gagcctggtg
      241 gccgactgtc tgaaagctgc ccagtcccga gacttcacag tgaaagacat catctacctc
      301 catccttcaa ccactccata tcctggtgga tttaaatgtt tcacctgtga aaaagcagca
      361 gacaattatg aatgcaaccg atgggctcct gacatctact gtcctcgaga caccagatac
      421 tgctacactc agcacacgat ggaagtcaca gggaatagca tctctgttac caaacgctgt
      481 gtcccactgg aggagtgctt atccacaggc tgccgagact cggagcatga aggctacaag
      541 atctgcacct cctgctgtga aggaaatatc tgtaatctac cgctccctcg aaatgacact
      601 gatgccacat ttgccaccac gtcccctata aaccagacaa acgggcaccc acactgtgtg
      661 tcagtgattg tgtcctgctt gtgggtgtgg ctgggactca ccttatagta accctcccta
      721 cccaatgtag gtgagctctg tggtttcacc gtggccatag tcatgcatga gtcatcagct
      781 tggcagcagc gacacaatgc aaccacagca ccccgagacg tcatcacagc cagccattac
      841 cattcctatg aagagcaagc attgctccct cccgtgctgt catttccagc ctaaccacaa
      901 ccccgcctga gtcagcctgt ccccgatacg gaccctgatt cttacaccac gaacctgtta
      961 tttcgctcca agaaagacct ctgcttttat tgatgtctgg ggttcctgct tcagcatcca
     1021 tgcctgagct gcaggaggtc ctgggccctc tgaagaataa gctatggata caggagatat
     1081 tcattctcct caggaaaaga gtaaagaacc attggtttca ttgcaaccac acctgcacct
     1141 agagctttag aagtttaaaa ctaaatccaa aataaatgga atcgtttctt tgagattctg
     1201 atggagtccc cgaaagagca gaaagagctt tgctcgattt aatttcccca gccttcttat
     1261 cttaacattg ggaaacatgt tccttctgct ctttgtagaa gattaaaaaa aaaagcaatt
     1321 ataaaagttt gccgtatttg taggagtgaa aagagaacaa tttccttcaa cttgatgaaa
     1381 ttagcatcct caagatgacg ttatcccttc ttgtaactga acagattggc cttgactcgg
     1441 gaactaatta tgcttcccga gttcccggat tccaggtgga ccagtagcat ctaaaaagtt
     1501 actaaatgaa tgggatgatt ttctccaggt gttgcattcc attcagatat agctgatctc
     1561 gtcagagaga ggacttcaga ataaaaggaa gctctgtgga ggttagtcct agttcatttt
     1621 gaaggctcag aaatggctaa gcaaaagtct ttctctttcc atagtattta ctgccaaaga
     1681 gctgtctcct tccacaatca cagtgacttg aaagagaaag ttctgagcta aattctcatt
     1741 agatcaataa gataagagca cacctgtgct agaataagaa aaagatggat cgtaagtagt
     1801 acggtggcct aagatttgtt tctctcagtt accgtttttg aagtagaagg aaaggctttt
     1861 attgtccgtg tatttttttt aacctatgaa gttgcatagt tgttttcttc tcccatgtaa
     1921 attctttaaa tgacatttat ttttgtatgg tataaactga aaactatatt tcaaaaaaaa
     1981 ttcttttctt tttctccaca aagtatcagt tagaatgctc gctttcaaca gcgggaggaa
     2041 ttgtcatcac tcctgatcat gggaagttat ctgtgatcct aggactgatg ctgaaaaaaa
     2101 ttattgctat gaacaagagt tgtgcatttg cctcaagggt ttgcctcatt gtctcctcag
     2161 aaaggttgcc cgagaaatat tagggtgaag gccatcactg gtgtgaccgt ctttgcaggg
     2221 ctgtggggtg tgtccacagg gaactgggcg gagctatgtc tccaagaggt caatgatgtt
     2281 aaaatatatc tgccctgcac agagaacttt agcttaaatg agactccccc accccctcag
     2341 ggaccaaatc tgaactgagg gcagaaactc tgatgcaaat cattgacgtt gcatcacaca
     2401 gccttaatga agagtttgac aggcgtatca atttcttgct tatgactgca gatgggagag
     2461 caggagagaa cgacctgtag taagcacctc ttatgtgccc ggcactttgc taagcacttt
     2521 acatagttag gccatataac cctacatcaa ttctgtaagg acagaaccta ttgatgtgta
     2581 cacatgaagg tcccaaggct caaggaagtt tgataaatga agccttttcc ttcagattta
     2641 gtttatgtgg gatgcgacat gtttgggaga aaaaaaaacg ggggaggggg gatggaattt
     2701 ctcagctagg aaaaactcta ggcctgactt catgggaatt tcccccatcc tatcatatag
     2761 aacgtatcct gcttctcagg atgacatttg catgtgtccc cagttgtcac ttttcctttg
     2821 gggagtaaag ttatagcttc cttatttatc ctctcgtaca gagaggaggt agttgacctt
     2881 gcatctaaag atgctctaag acaatgagaa tttgatgtcg tacatgtctg caagtactgt
     2941 ttttgtgcat ggccacattc cactgacatt tgccaagtct gcatgcaatc agaacaagag
     3001 acaagggact gaccatacga gagcctccct gcctggtttt cagggattgg atctcaaggg
     3061 tacagactgt cctcacctgg ggagtaatgg cagccattgt acacgtgtgc tgcatacgtc
     3121 cataatgcct ttcaaagtgt ctttttcatt ctcttgaaag agcgtggatt tgctcaccac
     3181 ccccagcacc aagaaaccaa ggtgggacca ttcatgttga aggtccagga ctagttaccc
     3241 atgtgactgt agtcacttta aactttccat taaacctcac cattggtgat ggcttacagt
     3301 gcaaagagcc atgatgtgta tattaaccta tgctctacat atttattttt agactttctt
     3361 cagcatccat gttagtatgg gatcgatgcc tatatgtaaa tattgtacac tttgtaaatc
     3421 aatgaataaa gattttaagt gtctttcatt aggcttcttc ctgcaagtgt gtatgtcaat
     3481 gattaatata tcaggtatgg gcttagcacc acagtgggtt tctttccatc acctactttc
     3541 cagatatgtc aagaaataca cacattaaag agactcatcc caaatggttc atacaggtga
     3601 tgagtgctcc aaaaataaaa gaagaggttg tcagactgtt
//
