LOCUS       NM_001192010            2181 bp    mRNA    linear   ROD 24-JUN-2024
DEFINITION  Rattus norvegicus Ly6/Plaur domain containing 5 (Lypd5), mRNA.
ACCESSION   NM_001192010 XM_577772
VERSION     NM_001192010.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2181)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000001.1.
            
            On Oct 18, 2022 this sequence version replaced NM_001192010.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643295.1335.1,
                                           SRR26643294.1367.1 [ECO:0000332]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on computational evidence
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-108               JAXUCZ010000001.1  89063229-89063336
            109-237             JAXUCZ010000001.1  89066225-89066353
            238-414             JAXUCZ010000001.1  89067121-89067297
            415-561             JAXUCZ010000001.1  89067568-89067714
            562-2181            JAXUCZ010000001.1  89068077-89069696
FEATURES             Location/Qualifiers
     source          1..2181
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /map="1q21"
     gene            1..2181
                     /gene="Lypd5"
                     /gene_synonym="RGD1560355"
                     /note="Ly6/Plaur domain containing 5"
                     /db_xref="GeneID:502308"
                     /db_xref="RGD:1560355"
     exon            1..108
                     /gene="Lypd5"
                     /gene_synonym="RGD1560355"
                     /inference="alignment:Splign:2.1.0"
     CDS             51..821
                     /gene="Lypd5"
                     /gene_synonym="RGD1560355"
                     /note="ly6/PLAUR domain-containing protein 5"
                     /codon_start=1
                     /product="ly6/PLAUR domain-containing protein 5 precursor"
                     /protein_id="NP_001178939.1"
                     /db_xref="GeneID:502308"
                     /db_xref="RGD:1560355"
                     /translation="MGTPGTFLLCFLGIVLCLTGTHALQCYSYEHTYFGPFDLSAIKL
                     PSVSCPQGCSEVVLTLDTGYRSLVTMVRKGCWTGPTTGPMQTNQDALPPDYAVVRGCA
                     TDYCNSDLKTHDALPNLSQAPNPPTLSGTECYACLGTHPEDCSPEKSRRVQCHQDQSA
                     CFQGNGRMTIGNFSVPVYIRTCHRPSCTTMGTTSPWTSIDLQGYCCEGHLCNKASVTQ
                     TLPGATSSALPRAPGILTLVITAPLLAITLGVSLGLPA"
     exon            109..237
                     /gene="Lypd5"
                     /gene_synonym="RGD1560355"
                     /inference="alignment:Splign:2.1.0"
     exon            238..414
                     /gene="Lypd5"
                     /gene_synonym="RGD1560355"
                     /inference="alignment:Splign:2.1.0"
     exon            415..561
                     /gene="Lypd5"
                     /gene_synonym="RGD1560355"
                     /inference="alignment:Splign:2.1.0"
     exon            562..2181
                     /gene="Lypd5"
                     /gene_synonym="RGD1560355"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 agagtggaag gaactgtcct cagggtcaga tctcagctcc acggactgcc atggggactc
       61 ccgggacctt cctgctctgc ttccttggga tcgtgctctg cctgacaggc acccacgcac
      121 tgcagtgtta cagctacgag cacacctact tcgggccctt cgacctcagc gccatcaagc
      181 tccccagtgt ctcttgtcct caagggtgct ctgaggtggt cttgacgctg gataccggtt
      241 accgcagcct ggtgacaatg gtccgaaaag gatgctggac gggccccact accggcccca
      301 tgcagaccaa ccaggatgct ctgcctcccg actacgcggt ggtccgcggt tgtgctactg
      361 actactgcaa cagcgacctc aagactcacg atgcccttcc caacctgagc caagcgccta
      421 acccaccgac gctcagtggc accgagtgct atgcctgctt agggactcac cctgaagact
      481 gttcccctga gaagtcccga cgggtccagt gccaccagga ccagagcgcc tgttttcagg
      541 gcaacggccg gatgaccatt ggcaacttct cggtgcctgt gtacatccga acctgccacc
      601 ggccctcttg caccaccatg ggcaccacca gcccctggac gtccatcgac ctgcagggct
      661 actgctgcga gggccacctc tgcaacaagg cctcggtgac acagaccctc cctggtgcca
      721 cgtcctctgc ccttccccgg gctcccggaa tcctgaccct ggtgatcact gctccgctac
      781 tggccatcac tctgggggtg tctctcgggc tccctgcata gacagtgcct ccagttcgct
      841 ctgcttctca tggctccagc acctggtgag ggctcctttt aaaaatgccg tgaaaataag
      901 ccacactccc tgtccctcca gtcactacct tccaccccac tctctgtccc tccttactgc
      961 caccagcccc gcctcctgac ggcccatcat tggtgcattg aatgaggtcc aaccagcttt
     1021 caatagtgcc atcccctggt caccaagcct tcaatacatg agccttttgt gacccctcac
     1081 agcaaaacat gccactcacc ttaaaaaccc acttctagca aggatagtgg taaccccagc
     1141 ctgttgaccc agcacccagg aggctgaagc aggaggactg ctacttcaag gccaagctgg
     1201 actacattac aagttcaagt cattgcaagt tcaagtccac cctgaactac agtgtgagac
     1261 cttttcaggc accaccttta atctcagcac cacagaggca gaggcaggtc tgagcttgag
     1321 ttcaacctgg tcttgagttc cagtaaagct aagactacat agtgaggcta tttcaaacaa
     1381 aagaaagaaa caaagaaaca aagaagagga aggaaaggga aaacaccccc accccacccc
     1441 accccacccc accccacccc actccacccc tgcccttttc tgtgtttctc taaagcagag
     1501 ttgaaatcca taatacaact ctgcagtccc tcttgggtct atcaccacga cagaaattgg
     1561 tccatatgct cccccacact atatagacta gtagggcagt tcatagtagc tacaaactgg
     1621 aaatgaccca aataaatatg aacagtcaaa taggatgaga agactgtgat ctaaccacaa
     1681 aatggagtac tatgcaacag tgaaaaatgg caactgacag ttacctccag tgtctgtgaa
     1741 agaatctcac aaaaaacagt gttgtgcaaa ataataaaga cacataatag agcaggttat
     1801 atgacttcat tcaaacaacg tatggaggtt gctaagagct agtatttgca attagaagag
     1861 agaagagtga ctgtctttgg gaacaagtaa ccagaagagg aaatatgggt gtcggggggt
     1921 ctagatgttg agttatggga tctaagaact tactgatcca gttccccccc ccattaatct
     1981 ttttgttgct gttttctttt gttttgaaag aaacatgtag cccaggctag cctcaaactc
     2041 gttggtataa cttaggatca tacggtactc ctgatccctt cacctattgc caattgctgg
     2101 gattgcatgt gggatccatc acgcctgtct tttctcatct tcccacagga atgttatttg
     2161 caataaaagg ttttaaaagt g
//
