LOCUS       NM_001110295            1168 bp    mRNA    linear   ROD 29-MAR-2024
DEFINITION  Rattus norvegicus Ly6/Plaur domain containing 4 (Lypd4), mRNA.
ACCESSION   NM_001110295 XM_001060707
VERSION     NM_001110295.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1168)
  AUTHORS   Florea,L., Di Francesco,V., Miller,J., Turner,R., Yao,A.,
            Harris,M., Walenz,B., Mobarry,C., Merkulov,G.V., Charlab,R.,
            Dew,I., Deng,Z., Istrail,S., Li,P. and Sutton,G.
  TITLE     Gene and alternative splicing annotation with AIR
  JOURNAL   Genome Res 15 (1), 54-66 (2005)
   PUBMED   15632090
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from
            JAXUCZ010000001.1.
            
            On Feb 3, 2021 this sequence version replaced NM_001110295.2.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643293.1936.1,
                                           SRR26360186.2784459.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-234               JAXUCZ010000001.1  89593657-89593890   c
            235-421             JAXUCZ010000001.1  89591342-89591528   c
            422-565             JAXUCZ010000001.1  89590795-89590938   c
            566-892             JAXUCZ010000001.1  89588911-89589237   c
            893-1168            JAXUCZ010000001.1  89588368-89588643   c
FEATURES             Location/Qualifiers
     source          1..1168
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /map="1q21"
     gene            1..1168
                     /gene="Lypd4"
                     /gene_synonym="rCG53718"
                     /note="Ly6/Plaur domain containing 4"
                     /db_xref="GeneID:681194"
                     /db_xref="RGD:1583497"
     exon            1..234
                     /gene="Lypd4"
                     /gene_synonym="rCG53718"
                     /inference="alignment:Splign:2.1.0"
     exon            235..421
                     /gene="Lypd4"
                     /gene_synonym="rCG53718"
                     /inference="alignment:Splign:2.1.0"
     CDS             355..1095
                     /gene="Lypd4"
                     /gene_synonym="rCG53718"
                     /note="ly6/PLAUR domain-containing protein 4; ly6/PLAUR
                     domain-containing protein 4-like"
                     /codon_start=1
                     /product="ly6/PLAUR domain-containing protein 4 precursor"
                     /protein_id="NP_001103765.3"
                     /db_xref="GeneID:681194"
                     /db_xref="RGD:1583497"
                     /translation="MVLKDWRSLQLLCLLEAISLLPCAEALLCYEATASAFRAVSLHN
                     WKWLLLRSMVCNQREGCEETIVFIETGTRKGILSFKGCSSAFSYPPQITYLVSPPGVS
                     IASYSRVCRSYLCNNLTNLEPFVRLKASQPISTLPSGKSCPTCVGKHDEECLPSFVTT
                     ENCPFSASTCHSSTLQFQAGNLNTTFLIMGCARESRKLLSDFQHIGSIRVTEVINILD
                     KSSAVGAGHCSRGPSWSALLCLLRLFRH"
     exon            422..565
                     /gene="Lypd4"
                     /gene_synonym="rCG53718"
                     /inference="alignment:Splign:2.1.0"
     exon            566..892
                     /gene="Lypd4"
                     /gene_synonym="rCG53718"
                     /inference="alignment:Splign:2.1.0"
     exon            893..1168
                     /gene="Lypd4"
                     /gene_synonym="rCG53718"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gaggcgttga tgcagaccct ctgcgcttgc gcacaacctg gcccaggagc ttaggcctcc
       61 ctcggttccc cttctatgtc tggtgtttag tgcaggcttt ttagactgcc ttttgccaca
      121 cacatctggg ttacagcgcc cgggtgtctg tggcattcct ggctaaagaa ggtggcagaa
      181 gtgacttcca gctggactgc tgctatgcag aggatgtgtc ctggagctgg aaagaaacag
      241 tgacccacag ggaagtggac agaggattca gggactgaca agaaccaaac ttgagattcc
      301 atctgaaatt ggctccagag tgacctgtca catccaggac cccgatacgg aaccatggta
      361 ctgaaggact ggagatctct gcagctgctg tgcctcttag aagccatctc tttactgcct
      421 tgtgctgaag ctcttctgtg ctacgaggca acagcttcag ccttcagagc tgtgtccttg
      481 cataactgga agtggcttct gttgaggagc atggtgtgca atcagagaga gggctgcgag
      541 gagaccatag tgttcatcga gacagggacc agaaagggaa tcttgagttt caaaggctgc
      601 agctccgcct tttcctaccc tccacaaatc acctacctcg tgtctccgcc tggagtgtcc
      661 atcgcctcct acagccgagt ctgcaggtcc tatctctgca acaacctaac caacctggag
      721 ccgttcgtga gactcaaggc cagccaaccc atctccacac tgccttctgg caaaagctgt
      781 ccaacctgcg tgggcaagca cgacgaggag tgtcttccaa gctttgtcac caccgagaac
      841 tgcccctttt ctgcttccac ctgtcacagt tccaccttgc agtttcaggc agggaatctc
      901 aataccacct tcctcatcat gggctgtgct cgtgaatcac gcaagctttt atcagacttt
      961 cagcacattg ggagcatcag agtgactgag gtcatcaaca tcctagataa gtcctcggct
     1021 gtcggtgcag ggcactgcag tcgaggtccc tcttggagcg ccctcttatg ccttcttaga
     1081 ctcttcagac actgaccacc cagcaggact ggaaaaatat cagaccacct tcttgcataa
     1141 tcaaataaaa tctcaggagt acccttct
//
