LOCUS       NM_001170329             963 bp    mRNA    linear   ROD 29-MAR-2024
DEFINITION  Rattus norvegicus Ly6/PLAUR domain containing 10 (Lypd10), mRNA.
ACCESSION   NM_001170329 XM_001076794 XM_238092
VERSION     NM_001170329.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 963)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000001.1.
            
            On or before Dec 19, 2009 this sequence version replaced
            XM_001076794.1, XM_238092.4.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26360181.2707447.1,
                                           SRR26360186.628836.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760389
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-64                JAXUCZ010000001.1  89405124-89405187   c
            65-208              JAXUCZ010000001.1  89402836-89402979   c
            209-391             JAXUCZ010000001.1  89401854-89402036   c
            392-523             JAXUCZ010000001.1  89401633-89401764   c
            524-963             JAXUCZ010000001.1  89400914-89401353   c
FEATURES             Location/Qualifiers
     source          1..963
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /map="1q21"
     gene            1..963
                     /gene="Lypd10"
                     /gene_synonym="RGD1564380"
                     /note="Ly6/PLAUR domain containing 10"
                     /db_xref="GeneID:292711"
                     /db_xref="RGD:1564380"
     CDS             1..750
                     /gene="Lypd10"
                     /gene_synonym="RGD1564380"
                     /note="CD177 antigen-like"
                     /codon_start=1
                     /product="uncharacterized protein LOC292711 precursor"
                     /protein_id="NP_001163800.1"
                     /db_xref="GeneID:292711"
                     /db_xref="RGD:1564380"
                     /translation="MGACHIQYALLLSLLGFVPCSDSLTCLDGSMVKFGSNLTKEAVD
                     WVEKLTASSDALMVMCQETLVLIDVGEQSVLLWSKGLSKLSGEIKKAQVFSSGPGIVA
                     ASYIHFCSTENCNKATSTKVLLDSLSLAASSKLGTLQCPVCLHFKGSCDPKSNLVLCP
                     VNTKCYASSMGIQGGSLSIFLNIFGCLESSRNVLLNNQTSIGVMSVREILEVKSSNSL
                     SHVLVPGTLLTWTLGLSALLSPLCAGISPLC"
     exon            1..64
                     /gene="Lypd10"
                     /gene_synonym="RGD1564380"
                     /inference="alignment:Splign:2.1.0"
     exon            65..208
                     /gene="Lypd10"
                     /gene_synonym="RGD1564380"
                     /inference="alignment:Splign:2.1.0"
     exon            209..391
                     /gene="Lypd10"
                     /gene_synonym="RGD1564380"
                     /inference="alignment:Splign:2.1.0"
     exon            392..523
                     /gene="Lypd10"
                     /gene_synonym="RGD1564380"
                     /inference="alignment:Splign:2.1.0"
     exon            524..963
                     /gene="Lypd10"
                     /gene_synonym="RGD1564380"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 atgggagcct gccacatcca gtacgccctg ctcctctctc tgctgggctt cgtcccctgc
       61 tcagattctc tgacctgtct tgatggatcc atggtgaagt tcggcagtaa cttgactaag
      121 gaagcagttg actgggttga aaagctgact gcatcatcag atgctctaat ggtgatgtgt
      181 caggagacac tggtgctcat agatgtaggt gaacaatctg tcttactgtg gagcaaaggc
      241 ctcagcaagc tttccggtga gatcaaaaaa gcccaagtgt tttcttctgg acctggaata
      301 gtggctgcct cttatatcca cttctgtagc actgaaaact gcaacaaagc taccagcacc
      361 aaagtgctac ttgactccct gtcacttgca gcctcctcta agctgggaac ccttcagtgt
      421 cctgtctgct tgcattttaa gggttcgtgc gacccgaagt ccaaccttgt tctatgccct
      481 gtgaacacta aatgctatgc cagttccatg ggaatccagg gaggtagcct cagtatcttt
      541 ttaaacattt ttggatgcct ggagtcatct cgcaatgtct tattgaacaa ccaaacttca
      601 atcggggtca tgagtgtaag agaaatcctc gaggtaaaga gcagcaattc actctcacat
      661 gtacttgtcc ctggcactct cctgacctgg actttagggc tctcagctct tctcagccct
      721 ttgtgtgcag ggatttctcc tctctgctga accatttcct ggccagccat acccagccct
      781 cctctgactt cataatccga aacctgaggc tgggaactgt tggcctgcac tgtcgggtgc
      841 cctcatccct cacccacaca cttctgcctc ctcatgttta gatatgggag ccgcagaact
      901 caccctgctc cagagcagac aaccacacat gtggaaaaat aaagttgctg ttgtttctcc
      961 aaa
//
