LOCUS       NM_001394393            1193 bp    mRNA    linear   ROD 30-MAR-2024
DEFINITION  Rattus norvegicus lysozyme C type 2 (Lyc2), transcript variant 1,
            mRNA.
ACCESSION   NM_001394393 XM_006241392
VERSION     NM_001394393.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1193)
  AUTHORS   Florea,L., Di Francesco,V., Miller,J., Turner,R., Yao,A.,
            Harris,M., Walenz,B., Mobarry,C., Merkulov,G.V., Charlab,R.,
            Dew,I., Deng,Z., Istrail,S., Li,P. and Sutton,G.
  TITLE     Gene and alternative splicing annotation with AIR
  JOURNAL   Genome Res 15 (1), 54-66 (2005)
   PUBMED   15632090
REFERENCE   2  (bases 1 to 1193)
  AUTHORS   Yeh,T.C., Wilson,A.C. and Irwin,D.M.
  TITLE     Evolution of rodent lysozymes: isolation and sequence of the rat
            lysozyme genes
  JOURNAL   Mol Phylogenet Evol 2 (1), 65-75 (1993)
   PUBMED   8081549
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000007.1.
            
            On Apr 16, 2021 this sequence version replaced XM_006241392.4.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643297.25138.1,
                                           SRR22582419.1142509.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760400, SAMEA5760476
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-166               JAXUCZ010000007.1  54773009-54773174
            167-331             JAXUCZ010000007.1  54776730-54776894
            332-410             JAXUCZ010000007.1  54778755-54778833
            411-1193            JAXUCZ010000007.1  54779570-54780352
FEATURES             Location/Qualifiers
     source          1..1193
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="7"
                     /map="7q22"
     gene            1..1193
                     /gene="Lyc2"
                     /gene_synonym="Lyz2"
                     /note="lysozyme C type 2"
                     /db_xref="GeneID:688047"
                     /db_xref="RGD:1593616"
     exon            1..166
                     /gene="Lyc2"
                     /gene_synonym="Lyz2"
                     /inference="alignment:Splign:2.1.0"
     CDS             31..477
                     /gene="Lyc2"
                     /gene_synonym="Lyz2"
                     /EC_number="3.2.1.17"
                     /note="putative lysozyme C-2; 1,4-beta-N-acetylmuramidase
                     C"
                     /codon_start=1
                     /product="putative lysozyme C-2 precursor"
                     /protein_id="NP_001381322.1"
                     /db_xref="GeneID:688047"
                     /db_xref="RGD:1593616"
                     /translation="MKALLVLGFLLLSASVQAKVFKHCELARILRSSALAGYRGVSLE
                     NWMCMAQHESNFDTEAINYNSTDQSTDYGIFQINSRYWCNDGKTPRAVNACGIPCSAL
                     LQDDITQAIQCAKRVVRDPQGIRAWVAWQRHCQNRDLSGYIRNCGV"
     exon            167..331
                     /gene="Lyc2"
                     /gene_synonym="Lyz2"
                     /inference="alignment:Splign:2.1.0"
     exon            332..410
                     /gene="Lyc2"
                     /gene_synonym="Lyz2"
                     /inference="alignment:Splign:2.1.0"
     exon            411..1193
                     /gene="Lyc2"
                     /gene_synonym="Lyz2"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 agccggcagc tggtccagct tccagtcacc atgaaggctc tcctagttct ggggttcctc
       61 ctgctctctg cctctgtcca ggccaaggtc tttaaacact gtgagttggc cagaattctg
      121 agaagttctg cactagcagg ctatcgtgga gtcagcctgg aaaactggat gtgtatggct
      181 cagcatgaga gtaattttga tacagaagct ataaactaca actctactga ccaaagcacc
      241 gactatggga tatttcagat caatagccga tactggtgta atgatggcaa aaccccaaga
      301 gcagtgaacg cctgtgggat accctgcagc gctctgctgc aggatgacat cactcaagcc
      361 atacaatgtg cgaagagagt tgtgagggat ccccaaggca ttcgagcatg ggtggcatgg
      421 caaagacact gtcaaaaccg agatctatcc gggtatattc ggaactgcgg agtctgaccg
      481 cagtgcactt ctactcagct cactctgtct ctttctcact gtgggagtag ctatgggaaa
      541 ggtcacactt ccttgctttc ccctcaaacc aacagggctt tcacttctca gtctcccaac
      601 acactgcaca ctgctcccag catcccgcac agtctcacca cacacatctc tgcacatcag
      661 gaagtaatgc acagtaggct ccatcgggat ccatcttcat cagccctgtg ccggatacaa
      721 acagcacata tttacaggag acgagttgat cttggggaat ggcagttgtg tgagtgccag
      781 ggctttgtat aggctcagca cccagttaga acagcctctg tggtggacct ggagggcttt
      841 tgagggccca ggactctcag tggatgagaa ctgagactgc ctgaactcag aaacttatga
      901 aacgtgtgag ctttcaaaac aatatcttct tagagctggc ctgtttatcc tgccttcaaa
      961 ataaattctc agcccgtatg cccgtctgtt ttaacccttg agaggatgtt cccagtcttg
     1021 tgaggtgctc agggggacca gtgagctgtg cttgtccatg tctttcttaa gtagcttcat
     1081 gcacactaac caactctgag acagatgagc ttgtaccacc agacaataat cactagaaca
     1141 gatctaatct catagagaaa aagtataatt ctcattaaat gattttcaat gca
//
