LOCUS       XM_039110517             986 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus lymphocyte antigen 96 (Ly96),
            transcript variant X1, mRNA.
ACCESSION   XM_039110517
VERSION     XM_039110517.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051340.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039110517.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..986
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="5"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..986
                     /gene="Ly96"
                     /gene_synonym="MD-2; MD2"
                     /note="lymphocyte antigen 96; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 1
                     mRNA, 4 ESTs, 1 Protein, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     60 samples with support for all annotated introns"
                     /db_xref="GeneID:448830"
                     /db_xref="RGD:1302993"
     CDS             133..498
                     /gene="Ly96"
                     /gene_synonym="MD-2; MD2"
                     /codon_start=1
                     /product="lymphocyte antigen 96 isoform X1"
                     /protein_id="XP_038966445.1"
                     /db_xref="GeneID:448830"
                     /db_xref="RGD:1302993"
                     /translation="MKIPISISSEPCIRLKGTNGFVHVEFIPRGNLKNLYFNLFININ
                     SIELPKRKEIVCHGYDDDYSFCRALKGEAVNTAIPFSFDGILFPKGHHRCVAEAIAGD
                     TEEKLFCLNFTIIHHHNVN"
ORIGIN      
        1 tggagcaatg ccgatcactt ccggatgcgg atcttccttc acccccggtt gcccccagat
       61 ctctgaagtg cttttacctc tgtggctgtc tggggttaag ctctctccac tctgaggcca
      121 gtttcagatc acatgaaaat ccctatttca attagttctg aaccctgtat aagattgaag
      181 ggaaccaatg gatttgtgca tgttgagttc attccaagag gaaacttaaa aaatttatat
      241 ttcaacctgt tcatcaatat caactccata gaattgccga agcgcaagga aattgtttgc
      301 catggatatg atgatgatta ttctttttgc agagctctga aaggggaggc tgtcaacaca
      361 gcaataccat tttccttcga cggaatacta tttcctaagg gccatcacag atgtgttgca
      421 gaagccattg ctggggatac agaggaaaag ctgttttgtt tgaatttcac catcattcac
      481 caccataatg ttaattagat gcattgagtc tctctctctc tctcatatat atatatatat
      541 atatatatat atatatatat atatatatat atatatatat caatcaaaag cagtgttctg
      601 ttttttgttt aaaatttttc ccatttatca ttcattttag tatgtgtgag agccctggtt
      661 ggcctggaac ttggattacc tgcctttgcc ttccaagtga tggaattaaa agtgtgtacc
      721 aggattccca gtggcagcct ctcctcctcc ctcctcttgc tcctcttcct gctcctcttc
      781 ctctttttcc ttctctttga gtcaggtttt cactgtgtag ctcaagatgg tcttgtattt
      841 cttacactaa tgccttagcc tcttgggtgc tgagattaca aatcacaatt gttgcttgta
      901 tttcaaagat cttggtgtct attttaagca ggtattggga aatgtaaaaa tacagatcta
      961 acattaaaga ttgttttgcg ttataa
//
