LOCUS       XM_006234242            6922 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus lymphocyte antigen 75 (Ly75), mRNA.
ACCESSION   XM_006234242
VERSION     XM_006234242.4
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051338.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Jan 10, 2024 this sequence was replaced by
            NM_001427146.1.
            
            On Jan 21, 2021 this sequence version replaced XM_006234242.3.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6922
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..6922
                     /gene="Ly75"
                     /note="lymphocyte antigen 75; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 9
                     ESTs, 2 Proteins, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 25 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:499800"
                     /db_xref="RGD:1565962"
     CDS             73..5232
                     /gene="Ly75"
                     /codon_start=1
                     /product="lymphocyte antigen 75"
                     /protein_id="XP_006234304.1"
                     /db_xref="GeneID:499800"
                     /db_xref="RGD:1565962"
                     /translation="MGTRWATPGRATGLLVLLLRCFELVEPSGNNPFTIVNENTGKCL
                     QPLSDWIVAQDCSETKNMLWKWVSQHRLFHLESQKCLGLDITKATDNLRMFNCDSKAM
                     LWWKCEHHSLYTAAQYSLALKDGYATASTNSTDVWKKGGSKENLCDQPYHEIYTRDGN
                     SYGRPCEFPFLIGKTWHHDCIRDEDHKGPWCATTLNYEYDQKWGICLQPENGCEGNWE
                     KNGQIGSCYQFNNQEVLTWKEAYVSCQNQGADLLSIHSTAELAYITGKEDIARIVWIG
                     LNQLYSARGWEWSDFKPLKFLNWDPGMPIAPVIGGSSCARMDTESGLWQSVSCESQQP
                     YICKKPLNSTAERPDDWTDSDTLCDGGWLPNKGFCYLLANESGSWDAARMKCKALGAD
                     LTSIHSLADVELVVTKLHSGDVKEEIWTGLKNTNSPTLFQWSDGTEVTVTHWNENEPN
                     VPYNKTPNCVSYLGKLGQWKVQSCEKELRYVCKKKGEITKDARSDELCPPNEGWKRHG
                     ETCYKIYEKEVPFGTNCNLTITSRFEQEYLNDMMKNYDKSLQKYFWTGLRDADSRGEY
                     SWAVAGGAKQAVTFSNWNFLEPASPGGCVAMSTGKTLGKWEVKNCRSFRALSICKKMR
                     GPQASEEAAPKPDDPCPEGWHTFPSSLSCYKVFHIERIVRKRNWEEAERFCRALGAHL
                     PSFSHRSEIKDLVHLLKDQFSGQRWLWIGLNKRSPDLQGSWQWSDRTPVSAVIMDWEF
                     QQDYDIRDCAAVKVLDTPWHRAWHFYDEREYAYLKPFACDAKLEWVCQIPKGSTPQMP
                     DWYNPERTGIHGPPVIIEGSEYWFVADPHLNYEEAVLYCASNQSFLATITSFTGLKAI
                     KNKIANISGDDQKWWVKTSENPIDRYFLGSRRMWHRFPMTFGDECLHMSAKTWILDLS
                     KRANCNAKLPFICEKYNVSSLEKYSPDPSAKVRCTGKWIPFQNKCFLKVNSEPVTFSQ
                     ASSICHSYGGTLPSVLNRNEQDFIISLLPEMEASLWLGLRWSAYERINKWTDGQELTY
                     SNFHPLLVGRRLSIPTNFFDDESHFHCALILNLKKSPLTGTWNFTSCSERHSLSLCQK
                     YSETEDRQPWENTSETVRYLNNLYKIVSKPLTWHAALKECLTEGMRLVSITDPYQQAF
                     LAVQAALRNTSFWIGLSSQDDELNFGWSDGKRLHFSNWAGSNEQLDDCVILDTDGFWK
                     TADCDDSQPAAICYYPGNETEEEVRPLDSAKCPSPVQSTPWIPFQNACYNFMITKNRH
                     KTVTPEEVQSMCKQLHSKAHSLSVRTEEENTFVVEQLLYYNYIASWVMLGITYENNSL
                     MWFDKTALSYTHWRKGRPTVKNGKFLAGLSTDGFWDIQSFNIIEETLHFYQHSIFACK
                     IEMVDYEDKHNSTLPQVIPYEDGVYNVIQKKVTWYEALKECSQSGGELASVHNPNGKL
                     FLEDVVNRDGFPLWVGLSSHDGSESSFEWSDGSAFDYVPWNSPQSPGDCVVLYPKGIW
                     RHERCPSVKDGAVCYKPTKPKELSSHTQSSKCPVAKREDVQWIQYGGHCYSSDQALHS
                     FSEAKQLCQELDHSATVVTIADENENKFVSRLMRENFNITMRVWLGLSQHSLDQSWSW
                     LDGLDVTFVKWENKSKDGDGKCSVLIASNETWRKVECSRGYARAVCKIPLSPDYRGIA
                     ILFAVLSVLALISGLIWFLLQRTHFHWTGFSPVRYEHGANEDEVMLPSFHD"
ORIGIN      
        1 cctagaggcg tcttgagacc ggcggggttc acccctggag cccgtgcggg gagcagaggc
       61 ttgggactgg agatggggac gcggtgggcc accccgggcc gggcgaccgg gctactcgtg
      121 ctgttgctgc ggtgctttga gcttgtggag ccttcaggta acaatccatt caccatcgtc
      181 aatgaaaaca ctggcaagtg cctccagccg ctgtctgact ggatagtggc ccaggactgt
      241 agcgaaacta aaaacatgtt atggaagtgg gtgtcccagc accgtctctt tcacctggaa
      301 tcccaaaagt gccttggcct agacattacc aaagccacag acaacctgag aatgttcaac
      361 tgtgactcca aagccatgct gtggtggaag tgtgagcacc attctctata cactgctgct
      421 cagtacagcc tggctctgaa agacggatat gccacagcca gcacaaattc aactgatgtc
      481 tggaagaagg gaggctccaa ggaaaacctc tgtgaccagc cttaccacga gatatatacc
      541 agagatggga actcctacgg gaggccttgt gaattccctt tcttaattgg taagacatgg
      601 caccatgact gcattcggga tgaagaccat aaagggccat ggtgtgccac taccctaaac
      661 tatgaatatg atcaaaagtg gggcatctgc ctacaaccag aaaatggctg cgaaggtaat
      721 tgggagaaga atgggcagat tggaagttgc taccagttta ataaccagga agttctgact
      781 tggaaggaag cttatgtttc ttgtcagaac caaggagctg atttactgag catccacagc
      841 actgcagaat tggcctatat tacgggaaaa gaagacattg ctagaattgt ttggattgga
      901 ctgaatcaac tctattctgc tagaggctgg gaatggtcag acttcaagcc actcaagttt
      961 cttaactggg atccaggcat gcccattgca cctgtgatcg gtgggtcgag ctgtgcaaga
     1021 atggacacag agtccgggct gtggcaaagt gtttcctgcg aatctcagca gccttacatc
     1081 tgcaagaagc cactgaacag cacggcggag cgcccagatg attggacaga ctcagatacc
     1141 ctctgtgacg ggggctggct gcctaataaa gggttctgct atctgctggc aaatgaaagt
     1201 ggttcctggg acgcagcgcg tatgaaatgc aaagccttgg gtgcagacct caccagcatt
     1261 cactccttag cagatgtgga gttggtcgtc acaaaactcc acagtgggga tgtcaaagaa
     1321 gagatctgga caggcctgaa gaacacaaac agccccactt tgttccagtg gtcggacggg
     1381 acggaagtta ctgtaacgca ctggaatgag aatgagccaa acgtccccta caataagacg
     1441 cccaactgtg tttcctattt aggaaagtta ggtcagtgga aagtccagtc ctgtgaaaag
     1501 gaactcagat acgtatgcaa gaaaaaggga gaaataacta aggatgcacg gtctgatgag
     1561 ctgtgtccgc cgaatgaggg ctggaagaga cacggagaaa cctgttacaa gatctatgag
     1621 aaagaggttc ctttcgggac gaactgcaac ctgaccatca ctagcaggtt tgagcaggag
     1681 tacttgaatg acatgatgaa gaactacgac aagtcccttc agaagtactt ctggactggc
     1741 ctgagagacg ccgactcccg aggagagtac agttgggccg tggctggggg ggcgaagcag
     1801 gctgtgacct tttccaactg gaattttctt gaaccagcgt ctccgggcgg gtgcgtggct
     1861 atgtccactg gaaagactct tggcaagtgg gaagtgaaga actgcagaag tttccgagca
     1921 ctttcgatat gcaagaaaat gaggggaccc caggcatccg aggaagcggc cccgaagcct
     1981 gacgacccct gtcctgaagg ctggcacacc ttcccttcca gcctttcttg ctataaggtg
     2041 ttccatatag aaagaatcgt aagaaagagg aactgggagg aagccgaaag attctgccga
     2101 gccctcggag cacacctacc cagcttcagt cacaggagtg aaattaagga ccttgtccat
     2161 ttgttaaagg accagttcag tgggcagcgc tggttgtgga taggtctgaa taaaagaagc
     2221 cctgatttgc aagggtcgtg gcagtggagt gaccgtacac cagtgtctgc tgtgatcatg
     2281 gattgggagt ttcaacagga ttacgacatc agagactgtg ctgctgtcaa ggtacttgac
     2341 acaccttggc atagagcctg gcatttctat gatgagaggg aatacgctta tttgaagcct
     2401 tttgcttgtg acgcaaaact tgaatgggtg tgccagattc caaaaggtag cactccccag
     2461 atgccagact ggtataatcc agagcgcact ggaattcatg ggcccccagt tataattgaa
     2521 ggaagtgaat actggtttgt tgctgatccc cacttaaact atgaagaagc cgtcttatac
     2581 tgtgctagca atcagagctt tcttgccacc ataacatctt ttacaggact aaaagctatc
     2641 aaaaacaaaa tagcaaatat atctggggat gaccagaagt ggtgggtgaa gacgagcgag
     2701 aatccaattg atcgttactt cctaggctcg cgacgcatgt ggcaccgatt ccccatgacg
     2761 tttggagacg agtgcttgca catgtcagcc aagacatgga ttcttgactt aagtaaacga
     2821 gcaaactgta atgccaagct gcccttcatc tgtgaaaaat ataatgtgtc ttcattagag
     2881 aaatatagtc cagatccttc agctaaagtg cggtgcactg ggaaatggat tccttttcag
     2941 aataagtgct ttctaaaggt caactctgag cccgttacat tttctcaagc aagcagcatt
     3001 tgccattcct atggtggcac ccttccttct gtgctgaacc ggaatgaaca agattttatt
     3061 atatccttgc ttccggaaat ggaagctagt ttgtggcttg gtctgcgctg gtctgcctac
     3121 gaaagaataa acaaatggac agatggccaa gagctgacct acagcaactt tcacccactg
     3181 ctggtcggtc ggaggctgag cataccaaca aacttctttg atgatgagtc tcacttccac
     3241 tgtgccttga ttcttaatct taaaaagtca ccgcttactg ggacctggaa ttttacatcc
     3301 tgttcagaac gccactctct gtctctctgt cagaagtact cagaaactga agacaggcag
     3361 ccctgggaga acacttcgga aaccgtgagg tatctaaata acctgtacaa aatcgtctcg
     3421 aagcccctga cctggcacgc tgctctgaag gagtgtctga cagagggcat gcggctggtg
     3481 agcatcacag acccttacca gcaggccttc ctcgccgtgc aggccgccct gcgcaacacc
     3541 tccttctgga tcggactctc cagccaggac gatgaactca actttggttg gtcagatggg
     3601 aaacgtcttc attttagtaa ctgggctgga agcaacgagc aacttgatga ctgcgtgata
     3661 ttagacacgg acggattctg gaaaacagcc gactgcgacg acagccagcc ggcagccatt
     3721 tgctactacc caggaaatga gaccgaggag gaggtcagac cactggacag tgctaagtgc
     3781 ccctctcctg tgcagagcac cccatggata ccgttccaga acgcctgcta caacttcatg
     3841 atcacaaaga acaggcataa gacagtcaca ccggaggagg tgcagtccat gtgcaagcag
     3901 ctgcattcta aagcacatag tctgagtgtt cgaactgagg aggagaatac ctttgttgtg
     3961 gagcagcttc tgtactacaa ttacatcgcc tcgtgggtca tgctaggaat aacctatgag
     4021 aacaattctt tgatgtggtt tgataaaact gcattgtctt acacacactg gagaaagggg
     4081 agaccaactg tgaaaaatgg caaatttttg gctggtctaa gtactgatgg cttctgggat
     4141 attcagtcct tcaatattat cgaagaaaca cttcattttt accagcacag catttttgct
     4201 tgtaaaattg aaatggttga ctacgaggac aagcacaata gcaccctgcc ccaggtcatc
     4261 ccatatgagg acggcgtcta taatgtcatt cagaagaagg tgacctggta tgaagccctg
     4321 aaggagtgct ctcaaagcgg gggagagttg gcgagtgttc acaacccaaa cgggaagctc
     4381 tttctggaag acgttgtgaa ccgtgacgga ttccctctct gggttgggct ctcgagtcat
     4441 gatggaagcg aatcgagttt cgaatggtcc gacggcagtg cgtttgacta tgtcccgtgg
     4501 aacagcccac aatctcctgg agactgtgtc gtcttatatc cgaaaggaat ttggagacac
     4561 gaaagatgcc cgtctgttaa ggatggtgct gtttgttaca agcctacgaa acctaaagag
     4621 ctgtcctctc atacacaatc atcaaaatgt ccagtggcaa agagggagga tgtgcagtgg
     4681 atccagtacg ggggtcactg ttactcgtcc gaccaggctt tgcacagctt ctcagaggcc
     4741 aagcaactgt gtcaagaact tgatcactct gcaactgttg tcaccatagc ggatgaaaat
     4801 gagaataagt ttgtgagcag attgatgagg gagaatttta atatcacgat gagagtctgg
     4861 ctgggactgt ctcaacattc tctcgatcag tcttggagtt ggctcgatgg attagatgtg
     4921 acatttgtca agtgggaaaa taaaagtaag gatggcgatg ggaaatgtag cgttttaata
     4981 gcttcaaatg agacctggag aaaagtcgaa tgttcccgtg gctatgcaag agctgtctgc
     5041 aaaattcctc tgagcccgga ttacagagga atagccatcc tgttcgctgt gctgagtgtc
     5101 ttagccctca tcagtggact gatttggttc ctcttgcaaa gaacccattt ccactggaca
     5161 ggcttctccc ccgttcggta tgaacacgga gccaatgaag acgaggtgat gctcccttct
     5221 ttccacgact aacttccgag tttcttcact ggccctggat gttcctgaag caagatgagc
     5281 cacttactgt tgtcctgcaa tcagtgttta ctgtgtttcc aagcagaagt ctaagtgatg
     5341 cgttcagtgg gtgggtgggt tgctcagccg atggcctaac agccgtgcta aggaatcagt
     5401 tatcagagca gagaggactt agagccaacg tggatgttca gattgtttag aggaggataa
     5461 atttagctaa tgcgattctt ctctgtaaga atgcagttgc tgggctaagt agaatgtaca
     5521 tattttaata gcattttaac agcctcatag aaaatcaaaa ctgtcagtac tagtaggctc
     5581 cacatctacc ttttatgaat atctgaccaa atgcaaagtt agtacctcag gcaaaagtga
     5641 gatcaatgat gcttcaaaat ggcctttcat ggcactgaaa aaacaaaaca aaacaagcca
     5701 tattttttac acagaaaatg gagcctcttg gaagatgttt ttatttcaaa ggtatttata
     5761 ccggtattac ttaattgtta catttctgtt tttaattact tatatagcgt ggtttggttt
     5821 tttcttttct tttttttttt aaaaaactta gagttactgt ttcctaaagt tgggaatgtt
     5881 accgttaggt tgactaggcg tgctgtatca gcatgtctgt gtttgatgat tttctttctt
     5941 acaaggaccc aattgcagat gagacaaact tttacagttt atgtatatat ttcacatagg
     6001 agatcaactt tttgttggtg gtggctggag gttttttact tgttttgttg tttttgtttt
     6061 gttttgtttt gtttgttttt gtttttcaaa acatggtttc tttgtgcaac aaagtcctgg
     6121 ctgccaggga ctggctttgt gggccaggct agcctccaat tcagagatcc cctgcgtctc
     6181 tgccacggga gtgctgggat caaaggccac cgcctccagc aggcaacatc gccttttgat
     6241 gaatgtatta ttttgttgcc tttttacctg agcagaacat aagagtggtc tttgaataat
     6301 gttgtttgct acttctgtat ttataaaaaa aaaaaaatga cagcttctaa ggcagtgaaa
     6361 ctcagaactc catgattcat gtggaaatat ttaaaactta aatgattagt gacacgttat
     6421 tctgtggatg taatttccat ctgaacaact ggaatatagt tttgctagta gtgtccaata
     6481 aatatgggga ctgttttatt cagtgtttca tatttatact ttagagtatt tttgtacaag
     6541 atccagattt attttgcttg aggtgtttat gccatcacaa agttgtaaat aattttctaa
     6601 gactctttta atgtaatcta caattttcct aaaatatttt tcttgaggcc tcttttaaat
     6661 aatcactagg agtttcttca aagaactaaa ctgatgctac atgaccacgg ctgtggttac
     6721 agctgctgcc atggtaaagt tggcttccct tttaaaactg ctggagttga tccttgcata
     6781 caaaagcatc tctaaattag gtttgattgt atcccatgtc ctaagatgag aaagtgacca
     6841 gctattgcaa gttgagatat tatttaaaga cttagtgaac actttttaaa gaataaatct
     6901 ttgtctctct aaatgatttt aa
//
