LOCUS       NM_139257                898 bp    mRNA    linear   ROD 07-MAY-2024
DEFINITION  Rattus norvegicus lymphocyte antigen 6 complex, locus I (Ly6i),
            transcript variant 1, mRNA.
ACCESSION   NM_139257
VERSION     NM_139257.2
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 898)
  AUTHORS   Yano,M., Iwama,A., Nishio,H., Suda,J., Takada,G. and Suda,T.
  TITLE     Expression and function of murine receptor tyrosine kinases, TIE
            and TEK, in hematopoietic stem cells
  JOURNAL   Blood 89 (12), 4317-4326 (1997)
   PUBMED   9192754
REFERENCE   2  (bases 1 to 898)
  AUTHORS   Friedman,S., Palfree,R.G., Sirlin,S. and Hammerling,U.
  TITLE     Analysis of three distinct Ly6-A-related cDNA sequences isolated
            from rat kidney
  JOURNAL   Immunogenetics 31 (2), 104-111 (1990)
   PUBMED   2154400
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from
            JAXUCZ010000007.1.
            
            On Nov 27, 2020 this sequence version replaced NM_139257.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: M30689.1, SRR26643287.18513.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN16676784, SAMN16676785
                                           [ECO:0000348]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-74                JAXUCZ010000007.1  108947993-108948066 c
            75-172              JAXUCZ010000007.1  108945626-108945723 c
            173-292             JAXUCZ010000007.1  108944557-108944676 c
            293-898             JAXUCZ010000007.1  108943081-108943686 c
FEATURES             Location/Qualifiers
     source          1..898
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="7"
                     /map="7q34"
     gene            1..898
                     /gene="Ly6i"
                     /gene_synonym="Ly6b"
                     /note="lymphocyte antigen 6 complex, locus I"
                     /db_xref="GeneID:246138"
                     /db_xref="RGD:628818"
     exon            1..74
                     /gene="Ly6i"
                     /gene_synonym="Ly6b"
                     /inference="alignment:Splign:2.1.0"
     exon            75..172
                     /gene="Ly6i"
                     /gene_synonym="Ly6b"
                     /inference="alignment:Splign:2.1.0"
     CDS             103..510
                     /gene="Ly6i"
                     /gene_synonym="Ly6b"
                     /note="lymphocyte antigen 6C; lymphocyte antigen 6B;
                     ly-6B; Ly6-B antigen; lymphocyte antigen 6 complex, locus
                     B"
                     /codon_start=1
                     /product="lymphocyte antigen 6B precursor"
                     /protein_id="NP_640350.1"
                     /db_xref="GeneID:246138"
                     /db_xref="RGD:628818"
                     /translation="MNRSCAMKSCVLILLLALLCAERAQGLNCYNCTMIPFGNTCSST
                     ATCPYPDGVCTIQVAEVVVSSVRLKVKSNLCLPGCPKSPQTPEVLGTVVHVNTDCCNT
                     DLCNAAGPTGGSTWTMAGVLLFILGSVLLQTLL"
     exon            173..292
                     /gene="Ly6i"
                     /gene_synonym="Ly6b"
                     /inference="alignment:Splign:2.1.0"
     exon            293..898
                     /gene="Ly6i"
                     /gene_synonym="Ly6b"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ctcttgctct cctccagcca caagtggtct cagaagatgc tagaatgtag aggaaacaga
       61 agatgaactg gcaggttttg cctgtgcgcc ccttctcaga ggatgaacag atcttgtgct
      121 atgaagtcct gtgtgctcat ccttctcctg gccctactgt gtgcagaaag agctcagggg
      181 ctaaactgct acaattgcac gatgatccca tttggtaata cctgctcatc aactgctacc
      241 tgcccctacc ctgatggagt ctgcactatt caggtggcag aagttgttgt gagctctgta
      301 agactgaaag taaagagcaa tctctgcctt cccggctgcc ccaagagtcc tcaaacacct
      361 gaggtcctcg gtaccgttgt ccatgtgaat actgactgtt gcaatacaga tctttgcaac
      421 gcagcaggtc ccactggagg cagcacgtgg accatggcag gggtgcttct gttcatcctg
      481 ggctcagtcc tcctgcagac cttgctgtga tggaccctcc aaggccctgc cacccttgtc
      541 cttttatcct tatgtgtaat cactccttcc tggagccctc tagtgataaa ttctgagtaa
      601 taaaaattca gaggggggat tgagtgtgga acaccttgtt gcaactctat agccactgct
      661 ggataggttc cccactcccc tctctagggc tttcagatat gtacttccta gaatgccatt
      721 gtgttgtggt ttgctgctct tggccctgga ggcaggggac agcacaggga agaggcagaa
      781 acccaaggca ctgtgacacc acctccatcc atacataaaa atctggggtt ctgcagggtt
      841 cccacacatg cctctgaaca tccccctatt tgagtccaat aaactctctg ttctccca
//
