LOCUS       NM_001001970             630 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus lymphocyte antigen 6 family member G6D (Ly6g6d),
            transcript variant 1, mRNA.
ACCESSION   NM_001001970 XM_579069
VERSION     NM_001001970.2
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 630)
  AUTHORS   Wu,M., Puddifoot,C.A., Taylor,P. and Joiner,W.J.
  TITLE     Mechanisms of inhibition and potentiation of alpha4beta2 nicotinic
            acetylcholine receptors by members of the Ly6 protein family
  JOURNAL   J Biol Chem 290 (40), 24509-24518 (2015)
   PUBMED   26276394
REFERENCE   2  (bases 1 to 630)
  AUTHORS   Mallya,M., Campbell,R.D. and Aguado,B.
  TITLE     Characterization of the five novel Ly-6 superfamily members encoded
            in the MHC, and detection of cells expressing their potential
            ligands
  JOURNAL   Protein Sci 15 (10), 2244-2256 (2006)
   PUBMED   17008713
REFERENCE   3  (bases 1 to 630)
  AUTHORS   Hurt,P., Walter,L., Sudbrak,R., Klages,S., Muller,I., Shiina,T.,
            Inoko,H., Lehrach,H., Gunther,E., Reinhardt,R. and Himmelbauer,H.
  TITLE     The genomic sequence and comparative analysis of the rat major
            histocompatibility complex
  JOURNAL   Genome Res 14 (4), 631-639 (2004)
   PUBMED   15060004
REFERENCE   4  (bases 1 to 630)
  AUTHORS   Ribas,G., Neville,M., Wixon,J.L., Cheng,J. and Campbell,R.D.
  TITLE     Genes encoding three new members of the leukocyte antigen 6
            superfamily and a novel member of Ig superfamily, together with
            genes encoding the regulatory nuclear chloride ion channel protein
            (hRNCC) and an N omega-N omega-dimethylarginine
            dimethylaminohydrolase homologue, are found in a 30-kb segment of
            the MHC class III region
  JOURNAL   J Immunol 163 (1), 278-287 (1999)
   PUBMED   10384126
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000020.1.
            
            On Sep 21, 2022 this sequence version replaced NM_001001970.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: DV718542.1, KU253685.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760389, SAMEA5760433
                                           [ECO:0000348]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-83                JAXUCZ010000020.1  3754228-3754310
            84-221              JAXUCZ010000020.1  3754407-3754544
            222-630             JAXUCZ010000020.1  3756628-3757036
FEATURES             Location/Qualifiers
     source          1..630
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="20"
                     /map="20p12"
     gene            1..630
                     /gene="Ly6g6d"
                     /gene_synonym="G6d; Ly6-D; Ng25"
                     /note="lymphocyte antigen 6 family member G6D"
                     /db_xref="GeneID:415062"
                     /db_xref="RGD:1303064"
     exon            1..83
                     /gene="Ly6g6d"
                     /gene_synonym="G6d; Ly6-D; Ng25"
                     /inference="alignment:Splign:2.1.0"
     CDS             29..433
                     /gene="Ly6g6d"
                     /gene_synonym="G6d; Ly6-D; Ng25"
                     /note="isoform 1 precursor is encoded by transcript
                     variant 1; lymphocyte antigen 6 complex G6D; lymphocyte
                     antigen 6 complex locus protein G6d; lymphocyte antigen 6
                     complex, locus G6D"
                     /codon_start=1
                     /product="lymphocyte antigen 6 complex locus protein G6d
                     isoform 1 precursor"
                     /protein_id="NP_001001970.1"
                     /db_xref="GeneID:415062"
                     /db_xref="RGD:1303064"
                     /translation="MNSQLIGILFSALLGAALGQRMRCYDCGGGPSNSCKQTVITCGE
                     GERCGFLDRKPQPSSEQAKQPSATLSHHYPACVATHHCNQVAIESVGDVTFTTQKNCC
                     FGDLCNGAVASSSTPLCILAAVTTLAWLLSGQ"
     exon            84..221
                     /gene="Ly6g6d"
                     /gene_synonym="G6d; Ly6-D; Ng25"
                     /inference="alignment:Splign:2.1.0"
     exon            222..630
                     /gene="Ly6g6d"
                     /gene_synonym="G6d; Ly6-D; Ng25"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 agaggcgcta ccggcataag ggaacgtgat gaactcccag ttgatcggga tcctgttcag
       61 cgccctgcta ggggctgccc tgggacagcg catgcggtgc tatgactgcg gtggaggccc
      121 cagcaactcc tgcaagcaga cagtgatcac ctgtggtgaa ggtgagcgct gtggattcct
      181 ggaccgcaaa cctcaaccca gctcagaaca agccaagcaa ccctctgcga ccttgagcca
      241 tcactaccca gcctgcgtgg ccacgcatca ttgcaaccaa gtggccatag agtcagtggg
      301 agacgtgact tttacaaccc agaaaaactg ctgcttcgga gacctgtgca acggcgccgt
      361 ggcaagctcc tcgaccccat tgtgcatctt ggctgcagtt accaccctgg cctggctctt
      421 gtcaggacag tagagcggga gagtgggact gagggtaggg aagggactga gggaccaagg
      481 gagtgaggga gctggacatc caaggtaaga agataagcgc tccgttgggt gccgttaaaa
      541 atgtcagact agtctagaga tgactgtaaa attatttttt tcattctttg aggtgaggtg
      601 ctgggattaa aggtgtgaac caccaccacc
//
