LOCUS       NM_001001969             846 bp    mRNA    linear   ROD 03-APR-2024
DEFINITION  Rattus norvegicus lymphocyte antigen 6 family member G6C (Ly6g6c),
            mRNA.
ACCESSION   NM_001001969 XM_227989
VERSION     NM_001001969.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 846)
  AUTHORS   Archambaud,C., Nahori,M.A., Soubigou,G., Becavin,C., Laval,L.,
            Lechat,P., Smokvina,T., Langella,P., Lecuit,M. and Cossart,P.
  TITLE     Impact of lactobacilli on orally acquired listeriosis
  JOURNAL   Proc Natl Acad Sci U S A 109 (41), 16684-16689 (2012)
   PUBMED   23012479
REFERENCE   2  (bases 1 to 846)
  AUTHORS   Mallya,M., Campbell,R.D. and Aguado,B.
  TITLE     Characterization of the five novel Ly-6 superfamily members encoded
            in the MHC, and detection of cells expressing their potential
            ligands
  JOURNAL   Protein Sci 15 (10), 2244-2256 (2006)
   PUBMED   17008713
REFERENCE   3  (bases 1 to 846)
  AUTHORS   Hurt,P., Walter,L., Sudbrak,R., Klages,S., Muller,I., Shiina,T.,
            Inoko,H., Lehrach,H., Gunther,E., Reinhardt,R. and Himmelbauer,H.
  TITLE     The genomic sequence and comparative analysis of the rat major
            histocompatibility complex
  JOURNAL   Genome Res 14 (4), 631-639 (2004)
   PUBMED   15060004
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BX883045.1.
            
            On Aug 30, 2004 this sequence version replaced XM_227989.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: CB691955.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760389, SAMEA5760434
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-55                BX883045.1         264338-264392
            56-166              BX883045.1         265904-266014
            167-846             BX883045.1         266356-267035
FEATURES             Location/Qualifiers
     source          1..846
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="20"
                     /map="20p12"
     gene            1..846
                     /gene="Ly6g6c"
                     /note="lymphocyte antigen 6 family member G6C"
                     /db_xref="GeneID:294241"
                     /db_xref="RGD:1302999"
     CDS             1..381
                     /gene="Ly6g6c"
                     /note="lymphocyte antigen 6 complex G6C; lymphocyte
                     antigen 6 complex locus protein G6c; lymphocyte antigen 6
                     complex, locus G6C"
                     /codon_start=1
                     /product="lymphocyte antigen 6 complex locus protein G6c
                     precursor"
                     /protein_id="NP_001001969.1"
                     /db_xref="GeneID:294241"
                     /db_xref="RGD:1302999"
                     /translation="MKHLLLLTLSAVLCCWVSADTRCHSCYKVPVLGCVDRQSCRLEP
                     GHKCLTTNVYLGKMWVFSNLRCGTPEEPCREVFNETNHKLGLSYNTTCCDKDNCNSPA
                     PRPTPTLALISLTSLAGLGLWLLH"
     exon            1..55
                     /gene="Ly6g6c"
                     /inference="alignment:Splign:2.1.0"
     exon            56..166
                     /gene="Ly6g6c"
                     /inference="alignment:Splign:2.1.0"
     exon            167..846
                     /gene="Ly6g6c"
                     /inference="alignment:Splign:2.1.0"
     regulatory      823..828
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Ly6g6c"
     polyA_site      846
                     /gene="Ly6g6c"
                     /experiment="experimental evidence, no additional details
                     recorded"
ORIGIN      
        1 atgaaacacc tcttgctgct caccttgtct gctgtgctct gctgctgggt ctcagctgac
       61 actcgatgtc actcctgcta caaggtgcct gtgctgggct gtgtggatcg acagtcctgc
      121 cgcctggaac ccggccacaa atgcctgaca acaaacgtgt accttgggaa gatgtgggtt
      181 ttctctaacc tgcgctgtgg cacaccagag gagccttgtc gggaggtctt caatgaaacc
      241 aaccacaagc taggcctgag ctacaacacc acctgctgtg acaaggacaa ctgtaacagc
      301 ccagctccac ggcccacacc tacactggcc ctcatctccc tcacctccct ggctggcctt
      361 ggcctctggc tattgcattg agactggctc gatggccaca ctcttcccac ctgctctagc
      421 ctgagccttt cttcccacgt cctcagagct ccggctttcc agaacgttct cttctcaccc
      481 ccggctcctt atcttctgaa gaccattttc ctagtcctac accatttttt tttaatggga
      541 ctgtgcctag agtggtcttt ctagccaccg cttctgcttc tccagttggc accctccact
      601 ccatttttcc ccccagtcct ttcccatttc cttctagaac actctacctc ctccactggc
      661 cactgatagg gccccctcct ttggacgcac actgctgtgc ctctgggatc taggtctgga
      721 agaactcctg tcttgtttcc agggagcgat gcccaaaaga cccactgacc tcattgcctg
      781 ggcctgattc accagaccct ccgctcatcc cctatcctga gaaataaatg tcagtgtcta
      841 acaaac
//
