LOCUS       NM_001001934            1131 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus lymphocyte antigen 6 family member G5B (Ly6g5b),
            mRNA.
ACCESSION   NM_001001934 XM_579067
VERSION     NM_001001934.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1131)
  AUTHORS   Hernandez-Torres,F., Rastrojo,A. and Aguado,B.
  TITLE     Intron retention and transcript chimerism conserved across mammals:
            Ly6g5b and Csnk2b-Ly6g5b as examples
  JOURNAL   BMC Genomics 14, 199 (2013)
   PUBMED   23521802
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1131)
  AUTHORS   Mallya,M., Campbell,R.D. and Aguado,B.
  TITLE     Characterization of the five novel Ly-6 superfamily members encoded
            in the MHC, and detection of cells expressing their potential
            ligands
  JOURNAL   Protein Sci 15 (10), 2244-2256 (2006)
   PUBMED   17008713
REFERENCE   3  (bases 1 to 1131)
  AUTHORS   Hurt,P., Walter,L., Sudbrak,R., Klages,S., Muller,I., Shiina,T.,
            Inoko,H., Lehrach,H., Gunther,E., Reinhardt,R. and Himmelbauer,H.
  TITLE     The genomic sequence and comparative analysis of the rat major
            histocompatibility complex
  JOURNAL   Genome Res 14 (4), 631-639 (2004)
   PUBMED   15060004
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000020.1.
            
            On Sep 19, 2022 this sequence version replaced NM_001001934.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: HE864429.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN06680412, SAMN12840106
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-180               JAXUCZ010000020.1  3710710-3710889
            181-309             JAXUCZ010000020.1  3710986-3711114
            310-1131            JAXUCZ010000020.1  3711371-3712192
FEATURES             Location/Qualifiers
     source          1..1131
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="20"
                     /map="20p12"
     gene            1..1131
                     /gene="Ly6g5b"
                     /note="lymphocyte antigen 6 family member G5B"
                     /db_xref="GeneID:406867"
                     /db_xref="RGD:1303101"
     exon            1..180
                     /gene="Ly6g5b"
                     /inference="alignment:Splign:2.1.0"
     CDS             123..707
                     /gene="Ly6g5b"
                     /note="lymphocyte antigen 6 complex G5B; lymphocyte
                     antigen 6 complex locus protein G5b; lymphocyte antigen 6
                     complex, locus G5B"
                     /codon_start=1
                     /product="lymphocyte antigen 6 complex locus protein G5b
                     precursor"
                     /protein_id="NP_001001934.1"
                     /db_xref="GeneID:406867"
                     /db_xref="RGD:1303101"
                     /translation="MRACVLVHVLTMVGFALGKAPVASVRTCHLCFLEDPSIGCISGS
                     EKCTISSSSPCMVITIYQNVKVRFHVRGCGQHHSFRCQENHVIYYSDYWYRVNCCQYD
                     YCNSWSSAQHQSTLPGPPGNHLGVPLSESQIKQFYQALHLPLFQPDLHTHKVSEGPDS
                     LILPPGLGLSIADLRKIYLFLNSSGLLVLPQARP"
     exon            181..309
                     /gene="Ly6g5b"
                     /inference="alignment:Splign:2.1.0"
     exon            310..1131
                     /gene="Ly6g5b"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 cagtttctgc tcagactgcc tgtctaaccc attctgcctc tgaagatcaa ggagtgtgat
       61 cccaggaagg tggggctgtg ggctactcca cgggagttgc tcctctcccc tgaaattcca
      121 taatgagggc ctgtgtgctt gtccatgtgc tgaccatggt gggctttgcc ttggggaagg
      181 ctccggtcgc cagcgtccgt acctgccacc tgtgcttctt agaagaccct tcgataggct
      241 gcatttctgg gtcagaaaag tgcaccatca gctcttcctc gccatgcatg gtgatcacca
      301 tctatcagaa tgttaaggtt cgcttccacg tacggggctg tggacagcac cactccttcc
      361 ggtgtcaaga aaatcacgtc atctactact cagactactg gtatagggtt aattgctgcc
      421 agtatgatta ctgcaactcc tggtccagtg cccagcacca gagcactctg cctgggcccc
      481 caggaaacca tctgggtgtg cccctctctg agtctcagat aaaacagttc taccaggccc
      541 tgcacctccc tctgtttcag cctgacctcc acactcataa ggtgtctgag ggcccggact
      601 ctctcattct gcccccgggg ctgggcttgt ccattgccga cctgcgcaaa atatacttgt
      661 tcctcaacag ttcaggactt ctggttcttc cccaggctag accctgacat gtcccatccc
      721 ccttcccaga ttctgctctg gctgggagcc tcgtcctttg agctgcccag atctgcgagc
      781 actcaaatcc tgatacctgt aatctcctag gcttccttct gctctccatg gccagcttct
      841 gtagtggccc caggtctggc tgctggtttg tctccctcct attcaagaat ttaaagatgg
      901 cttctgccca ggctgacctg acagtgttcc cgtatgagtg tcccggtctt caggtaccct
      961 cagtctggtc atatgccaca cctaagactc agtgccaggc ttcagcagga aggtcaaagg
     1021 gtgcctggac atctggcgcg gcgaccccat ttcaccttac tgcctgcctg cctggtgagg
     1081 ggttgcagcg gctcccatgt ttcctctata ataaaccaga acttggcaaa a
//
