LOCUS       NM_020103                857 bp    mRNA    linear   ROD 30-MAR-2024
DEFINITION  Rattus norvegicus Ly6-C antigen (Ly6c), mRNA.
ACCESSION   NM_020103 XM_003751343
VERSION     NM_020103.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 857)
  AUTHORS   Friedman,S., Palfree,R.G., Sirlin,S. and Hammerling,U.
  TITLE     Analysis of three distinct Ly6-A-related cDNA sequences isolated
            from rat kidney
  JOURNAL   Immunogenetics 31 (2), 104-111 (1990)
   PUBMED   2154400
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000007.1.
            
            On or before May 20, 2021 this sequence version replaced
            XM_003751343.4, NM_020103.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on transcript alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: FQ235068.1, FQ230335.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN16676784, SAMN16676785
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on expression, longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-31                JAXUCZ010000007.1  108844052-108844082 c
            32-129              JAXUCZ010000007.1  108843653-108843750 c
            130-246             JAXUCZ010000007.1  108842588-108842704 c
            247-857             JAXUCZ010000007.1  108840263-108840873 c
FEATURES             Location/Qualifiers
     source          1..857
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="7"
                     /map="7q34"
     gene            1..857
                     /gene="Ly6c"
                     /note="Ly6-C antigen"
                     /db_xref="GeneID:56778"
                     /db_xref="RGD:621266"
     exon            1..31
                     /gene="Ly6c"
                     /inference="alignment:Splign:2.1.0"
     exon            32..129
                     /gene="Ly6c"
                     /inference="alignment:Splign:2.1.0"
     CDS             60..464
                     /gene="Ly6c"
                     /note="lymphocyte antigen 6B-like"
                     /codon_start=1
                     /product="Ly6-C antigen precursor"
                     /protein_id="NP_064488.1"
                     /db_xref="GeneID:56778"
                     /db_xref="RGD:621266"
                     /translation="MNSSCAMKSCMLIFFLALLCAERAQGLKCYSCIEVPLNANCSTA
                     TCPYSDGVCVSQVLEAVEGSVRRTAKSNLCLPICPKFPQRTEILGTVVYTKVSCCNTD
                     LCNAAGPTGGSTWTVAGVLLFSLGSVLLETLL"
     exon            130..246
                     /gene="Ly6c"
                     /inference="alignment:Splign:2.1.0"
     exon            247..857
                     /gene="Ly6c"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 acggtgcctg caacctggtc acagagagga agttttctct gtgcacccct tctctgagga
       61 tgaacagttc ttgcgctatg aagtcctgta tgctcatctt tttcctggcc ctactgtgtg
      121 cagaaagagc tcagggctta aagtgctaca gttgcataga agtcccactt aatgctaact
      181 gctcaacagc tacctgcccc tactctgatg gagtctgtgt ttctcaggtg ttagaagctg
      241 tagagggctc tgtaagacgg acagcaaaga gcaatctctg ccttccaatc tgccccaagt
      301 ttcctcaaag aaccgagatc ctgggtaccg ttgtctacac gaaggtttcc tgttgcaata
      361 cagatctttg caatgcagca ggtcccactg gaggcagcac ctggaccgtg gcaggggtgc
      421 ttctgttcag cctgggctca gtcctcctgg agaccttgct gtgatggccc ctccaaggcc
      481 ccgccaccct tgtcctttta gcctcatgtg taatcactcc tctgaagccc tctagtgata
      541 aattctgagt aatagaaact cccaggtggg ggtagggtgt ggaacacctt gattcaactc
      601 tatagcccct gctgggtagg tgccccactc ccctctctag gactttcaga tctgtacttc
      661 ctggaatgcc attgtgttgt ggtttgctgc tcttggccct ggaggcacat ggacagcaca
      721 gggaagaggc agaaacccaa ggcactgtga caccaccccc atacatacat aaaaatctgg
      781 ggttctgcag ggttcccaca catgcctctc aaggttcccc tattttagtc caataaactc
      841 tctgttctcc cagccaa
//
