LOCUS       NM_001128099             798 bp    mRNA    linear   ROD 03-APR-2024
DEFINITION  Rattus norvegicus lymphocyte antigen 6 complex, locus A-like
            (Ly6al), mRNA.
ACCESSION   NM_001128099 XM_343263
VERSION     NM_001128099.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     INFERRED REFSEQ: This record is predicted by genome sequence
            analysis and is not yet supported by experimental evidence. The
            reference sequence was derived from JAXUCZ010000007.1.
            
            On Jun 4, 2008 this sequence version replaced XM_343263.3.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR23984936.820471.1,
                                           SRR22582424.1301368.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760476 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-70                JAXUCZ010000007.1  109067688-109067757 c
            71-190              JAXUCZ010000007.1  109066615-109066734 c
            191-798             JAXUCZ010000007.1  109064222-109064829 c
FEATURES             Location/Qualifiers
     source          1..798
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="7"
                     /map="7q34"
     gene            1..798
                     /gene="Ly6al"
                     /gene_synonym="Ly6a"
                     /note="lymphocyte antigen 6 complex, locus A-like"
                     /db_xref="GeneID:362935"
                     /db_xref="RGD:1307571"
     CDS             1..408
                     /gene="Ly6al"
                     /gene_synonym="Ly6a"
                     /note="lymphocyte antigen 6 complex, locus A"
                     /codon_start=1
                     /product="lymphocyte antigen 6 complex, locus A-like
                     precursor"
                     /protein_id="NP_001121571.1"
                     /db_xref="GeneID:362935"
                     /db_xref="RGD:1307571"
                     /translation="MNSSCAMMSCVLIFLLALLCAERAQGLKCYNCLGIPFDYTCSST
                     ATCPYPDGVCAIQVAEVVVSSVREKAKNHICLPVCPTSSQTAEILGTVVQVNTSCCTR
                     DLCNAAGPTGGSTWTMAGVLLFILGSVLLQTLL"
     exon            1..70
                     /gene="Ly6al"
                     /gene_synonym="Ly6a"
                     /inference="alignment:Splign:2.1.0"
     exon            71..190
                     /gene="Ly6al"
                     /gene_synonym="Ly6a"
                     /inference="alignment:Splign:2.1.0"
     exon            191..798
                     /gene="Ly6al"
                     /gene_synonym="Ly6a"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 atgaacagtt cttgtgctat gatgtcctgt gtgctcatct ttctcctggc cctactgtgt
       61 gcagaaagag ctcagggcct aaagtgctac aattgcttgg ggatcccatt tgattatacc
      121 tgctcatcaa ctgctacctg cccctaccct gatggagtct gcgctattca ggtggcagaa
      181 gttgttgtga gctctgtaag agagaaagca aagaaccata tttgccttcc cgtctgccca
      241 acgagttctc aaactgctga gatcctgggt actgttgtcc aagtgaatac ttcctgttgc
      301 accagagatc tttgcaacgc agcagggccc actggaggca gcacctggac catggcaggg
      361 gtgcttctgt tcatcctggg ctcagtcctc ctgcagaccc tgctgtgatg tcccctccaa
      421 agccctgcca cccttgtcct tttatcctct tgtgtattca ctcctccctg gagccctcta
      481 gtgataaatt ctgagtaata gaaactcaga ggtgggggta gggtgtgcaa caccttgttt
      541 caactctata gcccctgctg ggtaggtgcc ccactcccct ctctagggct ttcagatctc
      601 tacttcctgg aatgccattg tgttgtggtt tgctgctctt ggccctggag gcacgtggac
      661 agcacgagga agaggcataa acccaaggca ctgtgtgacc acctccatcc atacataaaa
      721 atctggggtc ctgcagggtt cccacacatg catctcaagg tccccctatt tgagtccaat
      781 aaactctctg ttctccca
//
