LOCUS       NM_001009497            1209 bp    mRNA    linear   ROD 01-APR-2024
DEFINITION  Rattus norvegicus immunoreceptor Ly49si1 (Ly49si1), mRNA.
ACCESSION   NM_001009497 XM_579297
VERSION     NM_001009497.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1209)
  AUTHORS   Nylenna,O., Naper,C., Vaage,J.T., Woon,P.Y., Gauguier,D.,
            Dissen,E., Ryan,J.C. and Fossum,S.
  TITLE     The genes and gene organization of the Ly49 region of the rat
            natural killer cell gene complex
  JOURNAL   Eur J Immunol 35 (1), 261-272 (2005)
   PUBMED   15593300
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000004.1.
            
            On Apr 6, 2023 this sequence version replaced NM_001009497.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26360186.267547.1,
                                           SRR26360186.1444628.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA5760383,
                                           SAMEA5760389 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on manual assertion, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-114               JAXUCZ010000004.1  165286063-165286176 c
            115-281             JAXUCZ010000004.1  165284226-165284392 c
            282-371             JAXUCZ010000004.1  165282040-165282129 c
            372-593             JAXUCZ010000004.1  165281197-165281418 c
            594-736             JAXUCZ010000004.1  165279968-165280110 c
            737-840             JAXUCZ010000004.1  165276264-165276367 c
            841-996             JAXUCZ010000004.1  165273311-165273466 c
            997-1209            JAXUCZ010000004.1  165273019-165273231 c
FEATURES             Location/Qualifiers
     source          1..1209
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="4"
                     /map="4q42"
     gene            1..1209
                     /gene="Ly49si1"
                     /note="immunoreceptor Ly49si1"
                     /db_xref="GeneID:494206"
                     /db_xref="RGD:1359487"
     exon            1..114
                     /gene="Ly49si1"
                     /inference="alignment:Splign:2.1.0"
     exon            115..281
                     /gene="Ly49si1"
                     /inference="alignment:Splign:2.1.0"
     CDS             170..976
                     /gene="Ly49si1"
                     /note="killer cell lectin-like receptor 5-like"
                     /codon_start=1
                     /product="immunoreceptor Ly49si1"
                     /protein_id="NP_001009497.1"
                     /db_xref="GeneID:494206"
                     /db_xref="RGD:1359487"
                     /translation="MSEQEVSYSNVRFKKCSGLQNQVRPEETQRARAAGHRERSVPWQ
                     LIVVALVILCSLRLVAVAIFVTNIFQYTHEKYELPEETPSLINNCSTMQSDIDLKEEM
                     LRNMSINCSQGNDFLQSLNRVQTRWYRETKTVLPSSQHTGKNVEIYWFCYGIKCYYFI
                     LDTKAWNGCKQTCQDSSLSLLKIDDEDELKFLRFQVLSDQYWIGLSYNKREKKWSWID
                     NGQSEFSLNLKKYNVKDGECMFLSKMRLENAKCMNPFPCICQKRLDKFPH"
     exon            282..371
                     /gene="Ly49si1"
                     /inference="alignment:Splign:2.1.0"
     exon            372..593
                     /gene="Ly49si1"
                     /inference="alignment:Splign:2.1.0"
     exon            594..736
                     /gene="Ly49si1"
                     /inference="alignment:Splign:2.1.0"
     exon            737..840
                     /gene="Ly49si1"
                     /inference="alignment:Splign:2.1.0"
     exon            841..996
                     /gene="Ly49si1"
                     /inference="alignment:Splign:2.1.0"
     exon            997..1209
                     /gene="Ly49si1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 agttttgcct ttcttcttgg agcctcttgg ggatagagac gaagaaaggt caactcttcc
       61 tccaactggg agatcaattc cctgtaacag aatcatttca gtgtagatac agagaaatca
      121 ttgaaggccc aactttaact gaaaacaaac ttcataaatc actccaaaaa tgagtgagca
      181 ggaggtgtct tactcaaatg tgagatttaa aaaatgttca ggtttgcaga accaagtgag
      241 acctgaggag actcaaaggg ccagagcagc tggccacaga gagaggtcag tcccttggca
      301 gctcattgtg gtagctcttg taatcctctg ttcccttcgg ctggtagctg ttgcaatttt
      361 cgtgacaaac atttttcagt atactcatga aaaatatgaa ctgccagagg aaactccaag
      421 ccttatcaat aactgcagca ccatgcaaag tgacatcgat ttaaaggaag aaatgctaag
      481 aaatatgtct ataaactgta gtcaaggcaa tgatttcctg caatctctaa acagagtaca
      541 gacaagatgg taccgtgaaa ctaagactgt tttaccttcc tctcagcaca caggcaaaaa
      601 tgttgaaata tactggttct gttatggtat aaaatgttat tatttcatcc tggacacaaa
      661 ggcatggaat ggatgtaaac agacctgcca ggattccagt ttatcccttc tgaagataga
      721 tgatgaggac gaactgaagt tccttcggtt ccaggttctt tcagaccagt actggattgg
      781 attgtcatat aataaaagag aaaagaaatg gtcatggatt gataatggcc aatctgaatt
      841 ttccttgaac ctaaagaaat acaatgtaaa ggatggagaa tgtatgttct tatctaaaat
      901 gagactagaa aatgctaagt gcatgaaccc cttcccatgt atttgtcaga agagactgga
      961 taaattccct cattgactct ccaacaagag ttaaaggatt tagtctgctg tgcaaacagc
     1021 gagatgagct ggaagagtgt gggaatgttc tctggaatct gatgtggcag agcagaggct
     1081 tcttccatcc tggtgaagac aggacacatt ttctctggtg cacggacatg gtttgcttca
     1141 aagtctccag gactctgctc tttctgattt cttaaactct tatagaataa aatcaaatcc
     1201 caataacca
//
