LOCUS       NM_001389229            1179 bp    mRNA    linear   ROD 01-APR-2024
DEFINITION  Rattus norvegicus Ly49 stimulatory receptor 6 (Ly49s6), transcript
            variant 1, mRNA.
ACCESSION   NM_001389229 XM_017592746
VERSION     NM_001389229.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1179)
  AUTHORS   Nylenna,O., Naper,C., Vaage,J.T., Woon,P.Y., Gauguier,D.,
            Dissen,E., Ryan,J.C. and Fossum,S.
  TITLE     The genes and gene organization of the Ly49 region of the rat
            natural killer cell gene complex
  JOURNAL   Eur J Immunol 35 (1), 261-272 (2005)
   PUBMED   15593300
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000004.1.
            
            On Nov 30, 2020 this sequence version replaced XM_017592746.1.
            
            ##Evidence-Data-START##
            CDS exon combination :: KX501213.1 [ECO:0000331]
            RNAseq introns       :: mixed sample support SAMEA5760389,
                                    SAMEA5760400 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on expression, longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-78                JAXUCZ010000004.1  165789993-165790070 c
            79-245              JAXUCZ010000004.1  165788143-165788309 c
            246-326             JAXUCZ010000004.1  165786433-165786513 c
            327-462             JAXUCZ010000004.1  165782788-165782923 c
            463-567             JAXUCZ010000004.1  165775840-165775944 c
            568-1179            JAXUCZ010000004.1  165765947-165766558 c
FEATURES             Location/Qualifiers
     source          1..1179
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="4"
                     /map="4q42"
     gene            1..1179
                     /gene="Ly49s6"
                     /note="Ly49 stimulatory receptor 6"
                     /db_xref="GeneID:494196"
                     /db_xref="RGD:1549735"
     exon            1..78
                     /gene="Ly49s6"
                     /inference="alignment:Splign:2.1.0"
     exon            79..245
                     /gene="Ly49s6"
                     /inference="alignment:Splign:2.1.0"
     CDS             134..742
                     /gene="Ly49s6"
                     /codon_start=1
                     /product="Ly49 stimulatory receptor 6"
                     /protein_id="NP_001376158.1"
                     /db_xref="GeneID:494196"
                     /db_xref="RGD:1549735"
                     /translation="MSKQDVPCSTVRFKKSSGLLYQVRPEETQRPREAGCRVPWQLTV
                     IAIGILLSLRLVAVAMLVTNSGCVEMHWLCYGIKCYYFIMDKRTWRKCIQTCQNYSLS
                     FLKIHVRISSFRTTLFETVTGLDCHIIIKKKEWSWIDNTPLNCDLVAMISLQKTGNCK
                     YFSMTGLNDDDCGKRHLCICEKGIEKYPAPLCSVNERSQSAL"
     exon            246..326
                     /gene="Ly49s6"
                     /inference="alignment:Splign:2.1.0"
     exon            327..462
                     /gene="Ly49s6"
                     /inference="alignment:Splign:2.1.0"
     exon            463..567
                     /gene="Ly49s6"
                     /inference="alignment:Splign:2.1.0"
     exon            568..1179
                     /gene="Ly49s6"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 agaccaggaa aggtcaaggc tatctctaat tgggagacga gtaccttcca acagaatcac
       61 tttgggatag agacacagaa aaaactcaag gcccgatttt aactgaaaac agacttcata
      121 catcactccc aaaatgagta agcaggatgt tccttgctca actgtgagat ttaaaaagtc
      181 ttcagggttg ctttaccaag tgaggcctga ggagactcaa aggcccaggg aagctggctg
      241 cagagtcccc tggcagctca ctgtgattgc tattggaatc ctcctttccc ttcggctggt
      301 tgctgttgca atgctggtga caaacagtgg ttgtgttgaa atgcattggt tatgctatgg
      361 tataaaatgt tattatttca tcatggacaa aagaacatgg cgtaaatgta tacagacctg
      421 ccagaattac agcttatcct ttctgaagat acatgtaagg ataagttcct tcaggaccac
      481 attatttgag acagttactg gattggattg tcatataata ataaaaaaaa aggaatggtc
      541 atggattgac aacaccccat tgaattgtga tttggtggca atgatatcac tacaaaaaac
      601 aggaaattgt aaatatttca gtatgacagg tctaaatgat gatgactgtg gtaaaagaca
      661 tctttgtatc tgtgaaaagg gaatcgaaaa atatcctgcc ccgttgtgca gtgttaacga
      721 aaggtcacag tctgctctgt gaataaagag atgagttgca aagcgaagac gtcttctgaa
      781 atttgtctta agagcagaca cagtattccc ttctggcaca tggagcagct tgcatgtgga
      841 gaatggacat cctttgttcc aagacccaaa cgattttcct cacattgtct cctgaatgac
      901 acacagaacc acatggagaa ctcaataagt aatgcacaca tcacatattc tttaggatat
      961 ttctacagcg catggcttgt taccacaatt aataacaaat ctgcagttgt gtgttttcat
     1021 gtattggtta gttactattt ggtttttttt tgtttttttt tgtttttttt gggggggtgt
     1081 agaaaaagtt agcattttta aaacgaggaa ctgtggatgg gaggactggt tggggtagtg
     1141 tcttgactgt taataaataa aataattttg aaaacctta
//
