LOCUS       NM_001012749            1443 bp    mRNA    linear   ROD 21-MAR-2023
DEFINITION  Rattus norvegicus Ly49 stimulatory receptor 5 (Ly49s5), mRNA.
ACCESSION   NM_001012749
VERSION     NM_001012749.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1443)
  AUTHORS   Naper C, Dai KZ, Kveberg L, Rolstad B, Niemi EC, Vaage JT and Ryan
            JC.
  TITLE     Two structurally related rat Ly49 receptors with opposing functions
            (Ly49 stimulatory receptor 5 and Ly49 inhibitory receptor 5)
            recognize nonclassical MHC class Ib-encoded target ligands
  JOURNAL   J Immunol 174 (5), 2702-2711 (2005)
   PUBMED   15728478
  REMARK    GeneRIF: Ly49s5 is a stimulatory receptor structurally related to
            Ly49i5 that recognizes ligands encoded within the
            histocompatibility class Ib region of the rat u haplotype.
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from AY649832.1.
            
            ##Evidence-Data-START##
            CDS exon combination :: AY846265.1 [ECO:0000331]
            RNAseq introns       :: single sample supports all introns
                                    SAMN16676786 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..1443
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="PVG"
                     /db_xref="taxon:10116"
                     /chromosome="4"
                     /map="4q42"
     gene            1..1443
                     /gene="Ly49s5"
                     /note="Ly49 stimulatory receptor 5"
                     /db_xref="GeneID:503662"
                     /db_xref="RGD:1359728"
     exon            1..115
                     /gene="Ly49s5"
                     /inference="alignment:Splign:2.1.0"
     exon            116..282
                     /gene="Ly49s5"
                     /inference="alignment:Splign:2.1.0"
     CDS             171..1004
                     /gene="Ly49s5"
                     /codon_start=1
                     /product="Ly49 stimulatory receptor 5"
                     /protein_id="NP_001012767.1"
                     /db_xref="GeneID:503662"
                     /db_xref="RGD:1359728"
                     /translation="MSEQEVPCSTVRFKKSSGLRYQVRPKETQRPREAGCRVPWQLTV
                     IAIGILLSLRLVAVAMLVTNIFQFSHEKHELQKTRNRHPNCSTMEKDINLKEETLRTM
                     SVECTSSNALLDLFNREQNRWYKKTKTVLASPQHPARCVEMHWFCHGIKCYYFIMDIR
                     TWHECKQTCQNYNLSFLKIDDKDELKFLQDHIIRDSYWVGLSYNNIKKEWSWIDSSPL
                     NCDLLACKPLQKTGYCIYFSMTGLHYDDCGKRHLCICEKGMDKIPAPLCSVKERSQSA
                     V"
     exon            283..363
                     /gene="Ly49s5"
                     /inference="alignment:Splign:2.1.0"
     exon            364..582
                     /gene="Ly49s5"
                     /inference="alignment:Splign:2.1.0"
     exon            583..725
                     /gene="Ly49s5"
                     /inference="alignment:Splign:2.1.0"
     exon            726..829
                     /gene="Ly49s5"
                     /inference="alignment:Splign:2.1.0"
     exon            830..1424
                     /gene="Ly49s5"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ctcagaggaa agttagtttt gtctttcatc tgggagcctc tttgtggata cagaccggga
       61 aaggtcaact ctttccagta ctttccaact gaatcacatt gggatagaga cacagaaaac
      121 actcaatgcc ggattttaac tgaaaacaga cttcatacat cactcccaaa atgagtgagc
      181 aagaggttcc ttgctcaact gtgagattta aaaagtcttc agggttgagg taccaagtga
      241 ggcctaagga gactcaaaga cccagggaag ctggctgcag agtcccctgg cagctcactg
      301 tgattgctat tggaatcctt ctttcccttc ggctggttgc tgttgcaatg ttggtgacaa
      361 acatttttca gtttagtcat gaaaaacatg aactgcagaa aactcgaaac cgtcacccta
      421 actgcagcac catggaaaag gacatcaact taaaggaaga aacgctgaga actatgtctg
      481 tagagtgtac ttccagcaat gcgcttctgg acttattcaa cagagaacag aacagatggt
      541 acaaaaaaac taagactgtt ttagcttccc ctcagcaccc agccaggtgt gttgaaatgc
      601 actggttctg ccatggtata aaatgttatt atttcatcat ggacataaga acatggcatg
      661 aatgtaaaca gacctgccag aactacaact tatcctttct gaagatagat gataaggatg
      721 aactgaagtt cctccaggac cacattattc gagacagtta ctgggttgga ttgtcatata
      781 ataatataaa aaaggaatgg tcatggattg acagcagtcc attgaattgt gatttgttgg
      841 catgtaaacc actacaaaaa acaggatact gtatatattt cagtatgaca ggtctacatt
      901 atgatgactg tggtaaaaga catctctgta tctgtgaaaa gggaatggac aaaatccctg
      961 ctccattgtg cagtgtgaag gaaaggtcac agtctgctgt gtgaagagag agatgaggtc
     1021 cacagggaag aaatctgctg aaaattggct caacggcaga cacagtaatc ccttctggca
     1081 catgaggagc ttgcatgtgg agagtggaca tcctttgctc caagacccaa atgattccct
     1141 cacattgtct cctgaatgac acagaggacc acatggagaa ctcgataaat aatgaatgta
     1201 tcaaatcgtc attaggatat ttccatagcc catggcttga tagcacaatt aataattaat
     1261 ctgcagttat gttttcatgt gttggttagt tactctttgt tatttttttg gtgtagaaaa
     1321 agttagcatt tttaataacc ttttgagatg aagaactgtg gaaatgaggt ctgatgggag
     1381 tggtgtctgg actgttaata aataaaataa ttttgaaaac cttaaaaaaa aaaaaaaaaa
     1441 aaa
//
