LOCUS       NM_001009501            1408 bp    mRNA    linear   ROD 27-MAR-2024
DEFINITION  Rattus norvegicus Ly49 inhibitory receptor 5 (Ly49i5), mRNA.
ACCESSION   NM_001009501 XM_579301
VERSION     NM_001009501.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1408)
  AUTHORS   Naper,C., Dai,K.Z., Kveberg,L., Rolstad,B., Niemi,E.C., Vaage,J.T.
            and Ryan,J.C.
  TITLE     Two structurally related rat Ly49 receptors with opposing functions
            (Ly49 stimulatory receptor 5 and Ly49 inhibitory receptor 5)
            recognize nonclassical MHC class Ib-encoded target ligands
  JOURNAL   J Immunol 174 (5), 2702-2711 (2005)
   PUBMED   15728478
  REMARK    GeneRIF: Ly49i5 is an inhibitory receptor structurally related to
            Ly49i5 that recognizes ligands encoded within the
            histocompatibility class Ib region of rat u and l haplotypes.
REFERENCE   2  (bases 1 to 1408)
  AUTHORS   Nylenna,O., Naper,C., Vaage,J.T., Woon,P.Y., Gauguier,D.,
            Dissen,E., Ryan,J.C. and Fossum,S.
  TITLE     The genes and gene organization of the Ly49 region of the rat
            natural killer cell gene complex
  JOURNAL   Eur J Immunol 35 (1), 261-272 (2005)
   PUBMED   15593300
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from
            JAXUCZ010000004.1.
            
            On Nov 27, 2020 this sequence version replaced NM_001009501.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AY649836.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA5760400,
                                           SAMEA5760434 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-67                JAXUCZ010000004.1  165694586-165694652 c
            68-266              JAXUCZ010000004.1  165692776-165692974 c
            267-356             JAXUCZ010000004.1  165691311-165691400 c
            357-566             JAXUCZ010000004.1  165690229-165690438 c
            567-709             JAXUCZ010000004.1  165689060-165689202 c
            710-813             JAXUCZ010000004.1  165682607-165682710 c
            814-1408            JAXUCZ010000004.1  165668959-165669553 c
FEATURES             Location/Qualifiers
     source          1..1408
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="4"
                     /map="4q42"
     gene            1..1408
                     /gene="Ly49i5"
                     /note="Ly49 inhibitory receptor 5"
                     /db_xref="GeneID:494211"
                     /db_xref="RGD:1359210"
     exon            1..67
                     /gene="Ly49i5"
                     /inference="alignment:Splign:2.1.0"
     exon            68..266
                     /gene="Ly49i5"
                     /inference="alignment:Splign:2.1.0"
     CDS             155..988
                     /gene="Ly49i5"
                     /note="killer cell lectin-like receptor family A member"
                     /codon_start=1
                     /product="Ly49 inhibitory receptor 5"
                     /protein_id="NP_001009501.1"
                     /db_xref="GeneID:494211"
                     /db_xref="RGD:1359210"
                     /translation="MTEQEVTYTTVRFHKSSVFQNEVRSEETQSAKEIGHRESSVPWK
                     LIVIALGILCLLLLVTVAVLVTNIFQYRHELQKTRNRHHNCSTMENDINLKEETLRNM
                     SVQCIPSNTLLNLFNREQNRWYKKTKTVLASPQHTARCVEMHWFCHGIKCYYFIMDIR
                     TWHECKQTCQNYNLSFLKIDDKDELKFLQEHFIRESYWIGLSYNNIKKEWSWIDNSPL
                     NCDLLACKPLQKTGYCIYFSMTGLHYDDCGKRHLCICEKGMDKITAPLCSVKERSQSA
                     A"
     exon            267..356
                     /gene="Ly49i5"
                     /inference="alignment:Splign:2.1.0"
     exon            357..566
                     /gene="Ly49i5"
                     /inference="alignment:Splign:2.1.0"
     exon            567..709
                     /gene="Ly49i5"
                     /inference="alignment:Splign:2.1.0"
     exon            710..813
                     /gene="Ly49i5"
                     /inference="alignment:Splign:2.1.0"
     exon            814..1408
                     /gene="Ly49i5"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ggtcaatttc tccaccaatt gggtgaccaa tttcctccac gagaatcgca tcgggataga
       61 gacacagatc taggtacctt cctataggtg aacatttaaa atttgaaaaa aaaacaattc
      121 tcaaggctcc agtatacttc atatattcca gaagatgact gagcaagagg ttacttacac
      181 aactgtgaga tttcataagt cgtcagtgtt ccagaacgaa gtgaggtctg aggagactca
      241 aagtgctaaa gaaattggcc acagagagag ttcagtcccc tggaagctca ttgtgatagc
      301 tcttggaatc ctctgtttac ttctgctggt tactgttgca gtattggtaa caaacatttt
      361 tcagtataga catgaacttc agaaaacccg aaaccgtcac cataactgca gcaccatgga
      421 aaatgatatc aacttaaagg aagaaacgtt gagaaatatg tctgtacagt gtattcccag
      481 caatactctt ctgaacttat tcaacagaga acaaaacaga tggtacaaaa aaactaagac
      541 tgttttagct tcccctcagc acacagccag gtgtgttgaa atgcactggt tctgccatgg
      601 tataaaatgt tattatttca tcatggacat aagaacatgg catgaatgta aacagacctg
      661 ccagaactac aacttatcct ttctgaagat tgatgataag gatgaactga agttccttca
      721 ggaacacttt attcgagaaa gttactggat tggattgtca tataataata taaaaaagga
      781 atggtcatgg attgacaaca gcccgttgaa ttgtgatttg ttggcatgta aaccactaca
      841 aaaaaccgga tactgtatat atttcagtat gacaggtcta cattatgatg actgtggtaa
      901 aagacatctc tgtatctgtg aaaaagggat ggacaaaatc actgccccat tgtgcagtgt
      961 gaaggaaagg tcacagtctg ctgcatgaat agagagatga ggtccacagg gaagaaatct
     1021 gctgaaaatt gactgaacag cagacacagt aatccgttct ggcacatgaa gcagcttgca
     1081 tgtggagaat ggacatcctt tgctccaata cccaaacaat tccctcacat tgtctcatga
     1141 atgacacagg accacatgga gaactcaata aagaatgaat ctatcaaatc gtcattagga
     1201 tatttccata gaccatggct tgatagcaca attaataact aacctgcagt tgtgggtttt
     1261 catgtgttgg tttgttactc tttgatatat ttttggtgta gaaaaagtta gcatttttaa
     1321 tagccttttg aaatgaagaa ctgtggaagg gaggtctgat ggggtgatgt ctggactgtt
     1381 aataaataaa ataattttga aaacctta
//
