LOCUS       NM_001009495            1588 bp    mRNA    linear   ROD 01-APR-2024
DEFINITION  Rattus norvegicus Ly49 inhibitory receptor 4 (Ly49i4), mRNA.
ACCESSION   NM_001009495 XM_008763405 XM_346717
VERSION     NM_001009495.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1588)
  AUTHORS   Kveberg,L., Dai,K.Z., Dissen,E., Ryan,J.C., Rolstad,B., Vaage,J.T.
            and Naper,C.
  TITLE     Strain-dependent expression of four structurally related rat Ly49
            receptors; correlation with NK gene complex haplotype and NK
            alloreactivity
  JOURNAL   Immunogenetics 58 (11), 905-916 (2006)
   PUBMED   17028855
REFERENCE   2  (bases 1 to 1588)
  AUTHORS   Nylenna,O., Naper,C., Vaage,J.T., Woon,P.Y., Gauguier,D.,
            Dissen,E., Ryan,J.C. and Fossum,S.
  TITLE     The genes and gene organization of the Ly49 region of the rat
            natural killer cell gene complex
  JOURNAL   Eur J Immunol 35 (1), 261-272 (2005)
   PUBMED   15593300
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000004.1.
            
            On or before Mar 30, 2023 this sequence version replaced
            XM_008763405.3, NM_001009495.2.
            
            ##Evidence-Data-START##
            CDS exon combination :: AY649834.1 [ECO:0000331]
            RNAseq introns       :: mixed sample support SAMN06621351,
                                    SAMN06680413 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-235               JAXUCZ010000004.1  165873372-165873606 c
            236-434             JAXUCZ010000004.1  165871556-165871754 c
            435-524             JAXUCZ010000004.1  165870062-165870151 c
            525-743             JAXUCZ010000004.1  165868970-165869188 c
            744-886             JAXUCZ010000004.1  165867248-165867390 c
            887-990             JAXUCZ010000004.1  165857540-165857643 c
            991-1588            JAXUCZ010000004.1  165852010-165852607 c
FEATURES             Location/Qualifiers
     source          1..1588
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="4"
                     /map="4q42"
     gene            1..1588
                     /gene="Ly49i4"
                     /note="Ly49 inhibitory receptor 4"
                     /db_xref="GeneID:494204"
                     /db_xref="RGD:1549758"
     exon            1..235
                     /gene="Ly49i4"
                     /inference="alignment:Splign:2.1.0"
     exon            236..434
                     /gene="Ly49i4"
                     /inference="alignment:Splign:2.1.0"
     CDS             323..1165
                     /gene="Ly49i4"
                     /codon_start=1
                     /product="Ly49 inhibitory receptor 4"
                     /protein_id="NP_001009495.1"
                     /db_xref="GeneID:494204"
                     /db_xref="RGD:1549758"
                     /translation="MTEQEVTYTTVRFHKSSVFQNKVRSEDTRSAKENGHRESSVPWK
                     LIVIALGILCSVLMVTVAALVTNIFQYSNEKHELQKTQNRQHNCSTMEKDINLKEETL
                     RNMSVESVHYNALLDLINREQNRWYKKTKTVLASPQHTGGCDEMHWFCYGIKCYYFTM
                     DIRIWHECKQTCQNYSLSFLKIDDKDELKFLQDHIIRDNYWIGSSYNNKKKEWSWIDN
                     SPFNLDFVARNSLRKTGYCMYFSMAGLHDDDCGKRYLCICEKGMDKIPAPLCSVKETS
                     HSAV"
     exon            435..524
                     /gene="Ly49i4"
                     /inference="alignment:Splign:2.1.0"
     exon            525..743
                     /gene="Ly49i4"
                     /inference="alignment:Splign:2.1.0"
     exon            744..886
                     /gene="Ly49i4"
                     /inference="alignment:Splign:2.1.0"
     exon            887..990
                     /gene="Ly49i4"
                     /inference="alignment:Splign:2.1.0"
     exon            991..1588
                     /gene="Ly49i4"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 aatatgttgc ttctttgctt tgctctcata gtcagctttc attaagcaat ttcctctttt
       61 tggtttggtc aagaggaggg gcagaaaatc atgaggttga gtaccactca aaagaaattt
      121 agttttgtca tttttctctg agcctcttag ggtatacaga catgtaaagg tcaacttttc
      181 caccaattgg gtgaccaatt tcctccacga gaatcgcatt gggatagaga gacagatcta
      241 ggtaccttcc tataggtgga catttaaact ttgaaaaaaa aacaattctc aaggctctag
      301 tatacttcat atattccaaa atatgactga gcaagaggtt acttacacaa ctgtgagatt
      361 tcataagtcg tcagtgttcc agaacaaagt gaggtctgag gatactcgaa gtgctaaaga
      421 aaatggccac agagagagtt cagtcccctg gaagctcatt gtgatagcac ttggaatcct
      481 ctgctccgtt ctgatggtaa ctgttgcagc attggtgaca aacatttttc agtatagtaa
      541 tgaaaaacat gaactacaga aaactcaaaa ccgtcagcat aactgcagca ccatggaaaa
      601 ggacatcaat ttaaaggaag aaacgctgag aaatatgtct gtagagagtg ttcactacaa
      661 tgctcttcta gacttaatca acagagaaca gaacagatgg tacaagaaaa ctaagactgt
      721 tttagcttcc cctcagcaca caggcgggtg tgatgaaatg cactggttct gctatggtat
      781 aaaatgttat tatttcacca tggatataag gatatggcat gaatgtaaac agacctgtca
      841 gaactacagc ttgtcctttc tgaagataga tgataaggat gaactgaagt tccttcagga
      901 ccacattatt cgtgacaatt actggattgg atcatcatat aataacaaaa aaaaggaatg
      961 gtcatggatt gacaacagcc catttaatct tgattttgtg gcaaggaatt cgctaagaaa
     1021 aacaggatac tgtatgtatt tcagtatggc aggtctacat gatgatgatt gtggtaaaag
     1081 atatctctgt atctgtgaaa agggaatgga caaaatccct gccccattgt gcagtgtgaa
     1141 ggaaacgtca cattctgctg tgtgaataga gagatgagct gcaaagggaa gaagtcttcg
     1201 taaatttggc ataacagcag acacagtatt ccctcttggc acatggagga gcttgcatgt
     1261 ggagaatgga cgtccttttt ttccaagacc caaacgattc cctcacattg tctcctgaat
     1321 gacacacaga accacatgga gaactcaata cataatgcac acatcacatc ttctttagga
     1381 tatttctata gcccttggct tgatagcaca attaatgact aatctgccgt tgtgggtttt
     1441 catgtattgg ttagttacta tttggtattt ttttgatgta caaaaagtta gcattttaaa
     1501 atccttttga gacgaggaac tgtggaaagg aggactggag ggggtgatga ctggactgtt
     1561 aataaataaa ataattttga aaacctta
//
