LOCUS       NM_001009499            1353 bp    mRNA    linear   ROD 03-APR-2024
DEFINITION  Rattus norvegicus Ly49 inhibitory receptor 3 (Ly49i3), mRNA.
ACCESSION   NM_001009499 XM_579299
VERSION     NM_001009499.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1353)
  AUTHORS   Nylenna,O., Naper,C., Vaage,J.T., Woon,P.Y., Gauguier,D.,
            Dissen,E., Ryan,J.C. and Fossum,S.
  TITLE     The genes and gene organization of the Ly49 region of the rat
            natural killer cell gene complex
  JOURNAL   Eur J Immunol 35 (1), 261-272 (2005)
   PUBMED   15593300
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000004.1.
            
            On Oct 7, 2022 this sequence version replaced NM_001009499.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AY659932.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMN06680412,
                                           SAMN06680414 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-200               JAXUCZ010000004.1  166067635-166067834 c
            201-290             JAXUCZ010000004.1  166066146-166066235 c
            291-509             JAXUCZ010000004.1  166065049-166065267 c
            510-652             JAXUCZ010000004.1  166063311-166063453 c
            653-756             JAXUCZ010000004.1  166052814-166052917 c
            757-1353            JAXUCZ010000004.1  166047250-166047846 c
FEATURES             Location/Qualifiers
     source          1..1353
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="4"
                     /map="4q42"
     gene            1..1353
                     /gene="Ly49i3"
                     /note="Ly49 inhibitory receptor 3"
                     /db_xref="GeneID:494208"
                     /db_xref="RGD:1359730"
     exon            1..200
                     /gene="Ly49i3"
                     /inference="alignment:Splign:2.1.0"
     CDS             89..931
                     /gene="Ly49i3"
                     /note="immunoreceptor Ly49i3"
                     /codon_start=1
                     /product="Ly49 inhibitory receptor 3"
                     /protein_id="NP_001009499.1"
                     /db_xref="GeneID:494208"
                     /db_xref="RGD:1359730"
                     /translation="MTEQEVTYTTVRFHKSSVFHNKVRSKETLSAKENGHRESSVPWK
                     LIVIALAILCSVLMVTVAALVTNIFQYSNEKHELQKTQNCHHNCSTIENDIKLKEEML
                     RNISVESVHYNAFLDLINREQKRWYKKTKTVLASPQHTGRCDEMHWFCYGIKCYYFTM
                     DIRIWRECKQICQNYSLSFLKIDDKDELKFLQDHIIRDNYWIGSSYNNKKKEWSWIDN
                     SPFNLDFVARTLLRKTGYCLYFSMSGLHDDDCGKRYLCICEKGMDKIPAPLCSVKETS
                     HSAV"
     exon            201..290
                     /gene="Ly49i3"
                     /inference="alignment:Splign:2.1.0"
     exon            291..509
                     /gene="Ly49i3"
                     /inference="alignment:Splign:2.1.0"
     exon            510..652
                     /gene="Ly49i3"
                     /inference="alignment:Splign:2.1.0"
     exon            653..756
                     /gene="Ly49i3"
                     /inference="alignment:Splign:2.1.0"
     exon            757..1353
                     /gene="Ly49i3"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gtctaggtac cttcctatag gtggacattt aaactttgaa aaaaaaaaca attctcaagg
       61 ctctagtata cttcatatat tccagaagat gactgagcaa gaggttactt acacaactgt
      121 gagatttcat aagtcgtcag tgttccacaa caaagtgagg tctaaggaga ctctaagtgc
      181 taaagaaaat ggccacagag agagttcagt cccctggaag ctcattgtga tagctcttgc
      241 aatcctctgt tcagttctga tggtaactgt tgcagcattg gtgacaaaca tttttcagta
      301 tagtaatgaa aaacatgaac tgcagaaaac tcaaaactgt caccataact gcagcaccat
      361 tgaaaatgac atcaaattaa aggaagaaat gctgagaaat atttctgtag agagtgttca
      421 ctacaatgct tttctagact taatcaacag agaacaaaaa agatggtaca agaaaactaa
      481 gactgtttta gcttcccctc agcacacagg caggtgtgat gaaatgcact ggttctgcta
      541 tggtataaaa tgttattatt tcaccatgga tataagaata tggcgtgaat gtaaacagat
      601 ctgtcagaac tacagcttat cctttctgaa gatagatgat aaggatgaac tgaagttcct
      661 tcaggaccac attattcgtg acaattactg gattggatca tcatataata acaaaaaaaa
      721 agaatggtca tggattgaca acagcccatt taatcttgat tttgtggcaa ggactttgct
      781 acgaaaaaca ggatactgtc tgtatttcag tatgtcaggt ctacatgatg atgattgtgg
      841 taaaagatat ctctgtatct gtgaaaaggg aatggacaaa atccctgccc cattgtgcag
      901 tgtgaaggaa acgtcacatt ctgctgtgtg aatagataga tgagctgcaa agggaagagt
      961 cttcttaaat ttggcataag agcagacaca gtattccctc ttggcacatg gagcagcttg
     1021 catgtggaga atggacttcc ttttttccaa gacccaaact tttccctcac attgtttcct
     1081 gaatgacaca cagaaccaca tggggaactc aatacataat gcacacatca tatcttattt
     1141 acgatatttc tatagccctt ggcttgatag cacagttaat gactaatctg ccattgtggg
     1201 ttttcatgta ttggttagtt actatttggt atttttttga tgtacaaaaa gttagcattt
     1261 taaaatcctt ttgagacgag gatctgtgga aaggaggact ggagggggtg atgaccggac
     1321 tgttaatcaa taaaataatt ttgaaaactt tat
//
