LOCUS       NM_001107853            2647 bp    mRNA    linear   ROD 17-JUL-2023
DEFINITION  Rattus norvegicus LUC7-like 2 pre-mRNA splicing factor (Luc7l2),
            mRNA.
ACCESSION   NM_001107853 XM_001069518 XM_231620
VERSION     NM_001107853.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2647)
  AUTHORS   Baltz AG, Munschauer M, Schwanhausser B, Vasile A, Murakawa Y,
            Schueler M, Youngs N, Penfold-Brown D, Drew K, Milek M, Wyler E,
            Bonneau R, Selbach M, Dieterich C and Landthaler M.
  TITLE     The mRNA-bound proteome and its global occupancy profile on
            protein-coding transcripts
  JOURNAL   Mol Cell 46 (5), 674-690 (2012)
   PUBMED   22681889
REFERENCE   2  (bases 1 to 2647)
  AUTHORS   Webby CJ, Wolf A, Gromak N, Dreger M, Kramer H, Kessler B, Nielsen
            ML, Schmitz C, Butler DS, Yates JR 3rd, Delahunty CM, Hahn P,
            Lengeling A, Mann M, Proudfoot NJ, Schofield CJ and Bottger A.
  TITLE     Jmjd6 catalyses lysyl-hydroxylation of U2AF65, a protein associated
            with RNA splicing
  JOURNAL   Science 325 (5936), 90-93 (2009)
   PUBMED   19574390
REFERENCE   3  (bases 1 to 2647)
  AUTHORS   Howell VM, Jones JM, Bergren SK, Li L, Billi AC, Avenarius MR and
            Meisler MH.
  TITLE     Evidence for a direct role of the disease modifier SCNM1 in
            splicing
  JOURNAL   Hum Mol Genet 16 (20), 2506-2516 (2007)
   PUBMED   17656373
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from CH473959.1.
            
            On or before Oct 4, 2007 this sequence version replaced
            XM_001069518.1, XM_231620.4.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC166855.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMD00132261, SAMD00132262
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..2647
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="4"
                     /map="4q23"
     gene            1..2647
                     /gene="Luc7l2"
                     /note="LUC7-like 2 pre-mRNA splicing factor"
                     /db_xref="GeneID:312251"
                     /db_xref="RGD:1308651"
     exon            1..397
                     /gene="Luc7l2"
                     /inference="alignment:Splign:2.1.0"
     CDS             337..1515
                     /gene="Luc7l2"
                     /codon_start=1
                     /product="putative RNA-binding protein Luc7-like 2"
                     /protein_id="NP_001101323.1"
                     /db_xref="GeneID:312251"
                     /db_xref="RGD:1308651"
                     /translation="MSAQAQMRAMLDQLMGTSRDGDTTRQRIKFSDDRVCKSHLLNCC
                     PHDVLSGTRMDLGECLKVHDLALRADYEIASKEQDFFFELDAMDHLQSFIADCDRRTE
                     VSKKRLAETQEEISAEVAAKAERVHELNEEIGKLLAKVEQLGAEGNVEESQKVMDEVE
                     KARAKKREAEEVYRNSMPASSFQQQKLRVCEVCSAYLGLHDNDRRLADHFGGKLHLGF
                     IEIREKLEELKRVVAEKQEKRNQERLKRREEREREEREKLRRSRSHSKNPKRSRSREH
                     RRHRSRSMSRERKRRTRSKSREKRHRHRSRSSSRSRSRSHQRSRHSSRDRSRERSKRR
                     SSKERFRDQDLASRDRDRSSRDRSPRDRDRKDKKRSYESANGRSEDRRSSEEREAGEI
                     "
     exon            398..492
                     /gene="Luc7l2"
                     /inference="alignment:Splign:2.1.0"
     exon            493..591
                     /gene="Luc7l2"
                     /inference="alignment:Splign:2.1.0"
     exon            592..702
                     /gene="Luc7l2"
                     /inference="alignment:Splign:2.1.0"
     exon            703..846
                     /gene="Luc7l2"
                     /inference="alignment:Splign:2.1.0"
     exon            847..1023
                     /gene="Luc7l2"
                     /inference="alignment:Splign:2.1.0"
     exon            1024..1115
                     /gene="Luc7l2"
                     /inference="alignment:Splign:2.1.0"
     exon            1116..1145
                     /gene="Luc7l2"
                     /inference="alignment:Splign:2.1.0"
     exon            1146..1337
                     /gene="Luc7l2"
                     /inference="alignment:Splign:2.1.0"
     exon            1338..2647
                     /gene="Luc7l2"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gcttctggcg ggtgtcgctg tcgggaggag gcgagagtcg gcttagtctg tgtcgcgttt
       61 gtctcaggaa ccggacggag agtgagggca cgagagctct ctctcgaggt ggttgccatc
      121 ttccacgtcc acgccgccgt gaggagtgca gcccggactc tccacgaccc ctccgactcc
      181 ccacttgcag gcctcgaggc cgcagcggcc accgagacag cgccgcacct cccccacccc
      241 ttcccctcgt cccccgcccg ccagggcccg gccggtgccc acccccgccc gcctgtctgc
      301 ctgcctgtct gcccgcccgc ccgctacgcc gccgccatgt cggcgcaggc ccagatgcgc
      361 gctatgctgg accagttaat gggcacctct cgggacggag atactactcg tcaacgaatc
      421 aaattcagtg atgatagagt atgcaagagc catcttctca actgttgccc ccatgatgtc
      481 ctttctggaa caagaatgga tcttggagaa tgcttgaaag tacatgacct ggctttaaga
      541 gcagattatg aaattgcatc caaagaacaa gactttttct ttgaacttga tgccatggat
      601 catctacagt cattcattgc agattgtgat agaagaacag aagtgtctaa gaaaagatta
      661 gcagaaactc aagaagagat aagtgctgaa gtggcagcaa aggcagagcg tgttcatgag
      721 ttaaatgagg aaataggcaa gttgttggcc aaagtggaac aactgggagc tgaaggaaat
      781 gtggaagaat ctcagaaagt catggatgaa gtagagaaag cacgggcaaa gaaaagagaa
      841 gcagaggaag tttatcggaa ttctatgcca gcttccagct ttcaacagca gaaacttcgt
      901 gtctgtgaag tctgttctgc atatttaggt cttcatgata atgaccgacg acttgctgat
      961 cattttgggg gtaaattgca tctgggattt attgaaataa gagagaagct cgaagaatta
     1021 aagagagttg tagctgagaa gcaggagaag agaaaccagg aacgtctgaa acgaagagaa
     1081 gagagggaga gagaagaacg ggagaaactg aggaggtccc gatcacatag caagaatccc
     1141 aaaagatcta gatccagaga gcatcgcaga caccgatctc gctccatgtc acgagaacgc
     1201 aagaggagga ctcgatcaaa atctcgtgag aaacgccatc gccacaggtc ccggtccagt
     1261 agcagaagcc gcagccgaag ccaccagaga agtcggcaca gttcaagaga taggagcaga
     1321 gagcgatcca agaggagatc ctcaaaagaa agattcagag atcaagactt agcatcacgt
     1381 gacagagaca ggagttcaag agacagatca ccccgtgacc gagatcgaaa agataagaag
     1441 cggtcctatg agagtgctaa tggcagatca gaagacagga ggagctctga agagcgtgaa
     1501 gcaggggaga tctaactagc tgtgtacata tcttcaatcc ttaaacttcc tatggcgcta
     1561 catgctattg tttagtttac agctgttcag atgacagtga acagttctag acaccaatcc
     1621 agtcaggcta gatgtctagt atccaatgat ctgaactgaa cctgctctcc ttgatgaagc
     1681 ctaaaactac atccatagtt ttttgtgaac ctgaacgtaa cagtttatat tatgagacac
     1741 tgttgtctat ttcttaggag cgatagtaaa tgaattgtgt tgatgccttg cagtttttga
     1801 acatttgtaa aatactgttt tcctttctat tccaaacagc agcagcttta ggaaatcctt
     1861 tttctttata attcttcctt tgacttttgt atctcctaat acctgtgcct ccaactataa
     1921 aagagtaaag ggaagcagta taacttctaa ggttctgttc acattggtta ttattggttg
     1981 attagagttg agcatttcta ctggattgtg tgctggagaa atttaaatat ggggctgttt
     2041 tgtttggggc ctattagagt tggaagttga acagttgttg gattacatac ttttgctttt
     2101 atattgaaat tttgaaatca gacttgtctt gatttttgtt tttgattttt tttgttgttt
     2161 ttggttttgg ttttttgttc tattaaactg ctgcgttcag tatattgagg gggatggggg
     2221 cagggactgt ttcaaaagca cttgttttgt gtgtgcaggg ggtatgtgtg catagtttaa
     2281 agactatact cttaagtgta aaaaaaataa aatgaaaaga atcaccacca ctactgtaac
     2341 ttgttcagta agttgtcact agaactattt gctgtgggta ttctctattt tgtaacatcc
     2401 ttaacagtgc ctttctgtgt acaaggcacc aaaggaagta aacatttaat tgtggattcc
     2461 agatggactg ttgccccacc aaaacctctt gctgactata ctacactact tcagagctgt
     2521 gtttaacagc ttctgtaagg aaagattgaa cttgtagaag cagctaagag ttgtttgttt
     2581 gtatttttta attgacaagc ctgaataaaa acaatatgta accaacatat tgaaaccagc
     2641 agtttct
//
