LOCUS       NM_001399674            1413 bp    mRNA    linear   ROD 30-MAR-2024
DEFINITION  Rattus norvegicus LUC7-like (Luc7l), transcript variant 1, mRNA.
ACCESSION   NM_001399674 XM_006246006
VERSION     NM_001399674.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1413)
  AUTHORS   Hegele,A., Kamburov,A., Grossmann,A., Sourlis,C., Wowro,S.,
            Weimann,M., Will,C.L., Pena,V., Luhrmann,R. and Stelzl,U.
  TITLE     Dynamic protein-protein interaction wiring of the human spliceosome
  JOURNAL   Mol Cell 45 (4), 567-580 (2012)
   PUBMED   22365833
REFERENCE   2  (bases 1 to 1413)
  AUTHORS   Girard,A., Sachidanandam,R., Hannon,G.J. and Carmell,M.A.
  TITLE     A germline-specific class of small RNAs binds mammalian Piwi
            proteins
  JOURNAL   Nature 442 (7099), 199-202 (2006)
   PUBMED   16751776
REFERENCE   3  (bases 1 to 1413)
  AUTHORS   Cazalla,D., Newton,K. and Caceres,J.F.
  TITLE     A novel SR-related protein is required for the second step of
            Pre-mRNA splicing
  JOURNAL   Mol Cell Biol 25 (8), 2969-2980 (2005)
   PUBMED   15798186
REFERENCE   4  (bases 1 to 1413)
  AUTHORS   Kimura,E., Hidaka,K., Kida,Y., Morisaki,H., Shirai,M., Araki,K.,
            Suzuki,M., Yamamura,K.I. and Morisaki,T.
  TITLE     Serine-arginine-rich nuclear protein Luc7l regulates myogenesis in
            mice
  JOURNAL   Gene 341, 41-47 (2004)
   PUBMED   15474286
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000010.1.
            
            On Jan 12, 2022 this sequence version replaced XM_006246006.4.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643299.41906.1,
                                           SRR26643292.39645.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760386
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-168               JAXUCZ010000010.1  15777837-15778004
            169-263             JAXUCZ010000010.1  15779928-15780022
            264-362             JAXUCZ010000010.1  15783709-15783807
            363-473             JAXUCZ010000010.1  15792976-15793086
            474-617             JAXUCZ010000010.1  15794224-15794367
            618-794             JAXUCZ010000010.1  15800733-15800909
            795-883             JAXUCZ010000010.1  15803783-15803871
            884-913             JAXUCZ010000010.1  15805095-15805124
            914-1081            JAXUCZ010000010.1  15805729-15805896
            1082-1413           JAXUCZ010000010.1  15807234-15807565
FEATURES             Location/Qualifiers
     source          1..1413
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="10"
                     /map="10q12"
     gene            1..1413
                     /gene="Luc7l"
                     /gene_synonym="Luc7l1"
                     /note="LUC7-like"
                     /db_xref="GeneID:360503"
                     /db_xref="RGD:1307542"
     exon            1..168
                     /gene="Luc7l"
                     /gene_synonym="Luc7l1"
                     /inference="alignment:Splign:2.1.0"
     CDS             108..1223
                     /gene="Luc7l"
                     /gene_synonym="Luc7l1"
                     /note="isoform 1 is encoded by transcript variant 1;
                     putative RNA-binding protein Luc7-like 1; LUC7-like 1"
                     /codon_start=1
                     /product="putative RNA-binding protein Luc7-like 1 isoform
                     1"
                     /protein_id="NP_001386603.1"
                     /db_xref="GeneID:360503"
                     /db_xref="RGD:1307542"
                     /translation="MSAQAQMRALLDQLMGTARDGDETRQRVKFTDDRVCKSHLLDCC
                     PHDILAGTRMDLGECTKIHDLALRADYEIASKERDLFFELDAMDHLESFIAECDRRTE
                     LAKKRLAETQEEISAEVSAKAEKVHELNEEIGKLLAKAEQLGAEGNVDESQKILMEVE
                     KVRSKKKEAEEEYRNSMPASSFQQQKLRVCEVCSAYLGLHDNDRRLADHFGGKLHLGF
                     IQIREKLDQLRKTVAEKQEKRNQDRLRRREEREREERLGRRSGSRTRDRRRSRSRDRR
                     RRRSRSTSRERRKFSRSRSRDRYRRHRSRSRSHSRGHRRASRDRSTKYKFSRERSLRE
                     ESWEYRRNERGPTDWRLENSNGKTASRRSEEKEAGEI"
     exon            169..263
                     /gene="Luc7l"
                     /gene_synonym="Luc7l1"
                     /inference="alignment:Splign:2.1.0"
     exon            264..362
                     /gene="Luc7l"
                     /gene_synonym="Luc7l1"
                     /inference="alignment:Splign:2.1.0"
     exon            363..473
                     /gene="Luc7l"
                     /gene_synonym="Luc7l1"
                     /inference="alignment:Splign:2.1.0"
     exon            474..617
                     /gene="Luc7l"
                     /gene_synonym="Luc7l1"
                     /inference="alignment:Splign:2.1.0"
     exon            618..794
                     /gene="Luc7l"
                     /gene_synonym="Luc7l1"
                     /inference="alignment:Splign:2.1.0"
     exon            795..883
                     /gene="Luc7l"
                     /gene_synonym="Luc7l1"
                     /inference="alignment:Splign:2.1.0"
     exon            884..913
                     /gene="Luc7l"
                     /gene_synonym="Luc7l1"
                     /inference="alignment:Splign:2.1.0"
     exon            914..1081
                     /gene="Luc7l"
                     /gene_synonym="Luc7l1"
                     /inference="alignment:Splign:2.1.0"
     exon            1082..1413
                     /gene="Luc7l"
                     /gene_synonym="Luc7l1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 aaagtgcggt gcggggttca ggcggataag atcgtctttc gtcgtcggtg tttgccgctt
       61 ctgctgttga gttgtgaaga gctagccggc cctccccact ggccaccatg tccgcccagg
      121 cgcagatgcg ggccctgttg gaccagctca tgggcacggc tcgggacgga gatgaaacca
      181 gacagagggt caagtttaca gatgaccgtg tctgcaagag tcaccttctg gactgctgcc
      241 cccacgacat ccttgctggg acgcgcatgg atttaggaga atgtaccaaa atccacgact
      301 tggcccttcg agcagattat gaaattgcaa gtaaagaaag agacctgttt tttgaattag
      361 atgctatgga tcacttagag tccttcattg cagagtgtga tcggagaact gaacttgcta
      421 agaagcggct ggctgaaaca caggaggaaa taagtgcaga agtttctgcc aaggcagaaa
      481 aagtacatga attaaatgaa gaaataggaa aacttcttgc taaagctgag cagttaggag
      541 ctgaaggaaa tgtggatgaa tcccagaaga ttcttatgga agtggagaag gttcgctcaa
      601 agaaaaaaga agcagaggaa gaatacagaa attccatgcc tgcatccagt tttcaacagc
      661 aaaaactccg tgtttgcgag gtttgttcag cttatcttgg tctccatgac aatgaccgtc
      721 gtcttgcaga ccacttcgga ggcaaattac acttggggtt cattcagatc cgagagaagc
      781 ttgatcagtt gaggaaaact gtggctgaaa aacaggaaaa aagaaatcag gatcgattga
      841 ggagaagaga ggagagagag cgagaagagc gcctgggcag gcggtctgga tcaagaaccc
      901 gagatcggag gaggtcacgt tcccgggatc gtcgaaggag gcggtctagg tctacctccc
      961 gagagcggcg gaagttttcc cgttccaggt cccgagatag ataccggcga catcgcagcc
     1021 gttcccggag ccacagccgg ggtcaccgac gggcttccag ggaccggagt acaaaataca
     1081 agttctccag ggagcgctca ttgagagagg aatcctggga gtacaggcgg aatgaacgag
     1141 ggcccactga ctggaggctg gagaactcca atggcaagac tgcatcgcgg aggtcggagg
     1201 agaaggaggc tggcgagatc tgaatctggt tcaggcgctg taaatagtct gacaaaagtt
     1261 cagcacagcc taaattaccc tttatatttg ctgactacaa ctcatctttt gtagttaaaa
     1321 tttctattgt ttggccctag ctgtgagttt ctagattgtt cagagctgct tctgtgtttg
     1381 gggttatgtt atataggaac aaataaatct ggc
//
