LOCUS       XM_039098430            2163 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus lymphotoxin alpha (Lta), transcript
            variant X1, mRNA.
ACCESSION   XM_039098430
VERSION     XM_039098430.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051355.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039098430.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2163
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="20"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2163
                     /gene="Lta"
                     /gene_synonym="Tnfb"
                     /note="lymphotoxin alpha; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 1
                     mRNA, 2 ESTs, 6 Proteins, and 98% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     15 samples with support for all annotated introns"
                     /db_xref="GeneID:25008"
                     /db_xref="RGD:3020"
     CDS             509..1117
                     /gene="Lta"
                     /gene_synonym="Tnfb"
                     /codon_start=1
                     /product="lymphotoxin-alpha isoform X1"
                     /protein_id="XP_038954358.1"
                     /db_xref="GeneID:25008"
                     /db_xref="RGD:3020"
                     /translation="MTPLGRLHLLRVLSTPPVFLLGLLLALPLGAQGLSGVRFSASRT
                     AHQPPQKHLTHGLLKPAAHLVGYPSKQNSLLWRANTDRAFLRHGFSLNNNSLLIPTSG
                     LYFVYSQVVFSGESCSPRAIPTPIYLAHEVQLFSSQYPFHVPLLSAQKSVYPGLQGPW
                     VRSMYQGAVFLLSKGDQLSTHTDGISHLHFSPSTVFFGAFAL"
ORIGIN      
        1 cccgcacagc aggtgagcct ctcctgccct gtctccttgg gcttaccccg gtaacaggca
       61 tccctcagga tcctgcctct tctcttgagc cacagtcttt tctgtacaac ctgcctggat
      121 cccccagcct tatctggtcc ttgtgccttg tggctttgat ttttggtctg ttctcatagc
      181 gtctaactcg gccttgtctc tctctctctc tctctctctc tctctctctc tctctctctc
      241 tgtcattgtc tcattctttg gtggagcttt cctcttccag tctgtctttc tctccttatc
      301 cccactcact tcagggttcc cctgcctgtc tgtccccttt tctgtctgtc gccctgtctc
      361 tcagggtggc tgtctcagct gggaggtaag atctgtcttc cgctgtgtgc cccgcctccc
      421 ctacacacat acacacatcc tctctctctc tctctctctc tctctctctc tctctctctc
      481 tctctctctc tctctgcagg ttctccccat gacaccactt ggacgtctcc acctcctgag
      541 ggtgcttagc acccctcctg tcttcctcct ggggctgctg ctggccctgc ctctaggggc
      601 ccagggactc tctggtgttc gcttctcagc ttccaggaca gctcaccagc cccctcagaa
      661 gcacttgacc catggcctcc tgaaacctgc cgctcacctt gttgggtacc ccagcaaaca
      721 gaattcactg ctctggagag caaacacgga ccgcgccttt ctccgacatg gcttctcttt
      781 gaacaacaac tctctcctga tccccaccag cggcctctac tttgtctact cccaggtggt
      841 tttctctgga gaaagctgct cccccagggc cattcctact cccatctacc tggcccacga
      901 ggtccagctg ttttcctccc agtacccctt ccatgtgcct ctcctcagcg cacagaaatc
      961 tgtgtatccg gggctacaag gaccgtgggt acgctcaatg taccaggggg ctgtgttcct
     1021 gctcagtaag ggggaccagc tgtccaccca cacagacggc atctcccact tacacttcag
     1081 ccccagcacc gtgttttttg gagcttttgc tctgtagaat ctagggaaac tcaggaactg
     1141 gattccagca cctctatcct gttcatcttg agggtcacat ccccagtctc cagccttccc
     1201 aaccaaaata gcctggagct ttcacgggag tctgaagcat ttcaaggcac cacgtctctc
     1261 ccccagggcc actccagatg ctcaggggga gactcaagcc tgtctagaag ttcctgcaca
     1321 gagcagggta tttgtgggtc taggcggggc agagacctgg acatgaagga gggacagaca
     1381 tggggggagg tgtctgggga cgggggaggt tgactattta tgaagagaag ggttaagtta
     1441 tttatttata gggaataaaa agaggggaga gatggaaagc cgtcgggtga caactaggtc
     1501 ccagacacaa aggcgtcagt taccacagaa caggactcat ctgagagagg gacggtgacg
     1561 gtgagagaag tagatgtagg tgaccaaggg gttttagaag aaagcccgag gctctaaaag
     1621 ccaaccactg cctggccaca catccacagg gagcccctgc accatccgtg aatcccaata
     1681 aacctctttt ccctgaaatt ctgtctgctt gtgtctgtct tggattgggg gagaatgttc
     1741 ctggtctctt taaggagtgg agcaggggac agaggcctca gttggatcat gggagtccag
     1801 acagagcaag gagacataaa ggagcaggca gctcccagta acatgatgga ttcgtgggag
     1861 tgaggcaggc taagtgccgg aggagaccca aaggataagg ctagggagat caatccaagg
     1921 ttggggagag acggaggttc tgggagaagt gactccccca gagggtggga gagtgtccag
     1981 gactgggagg gaaggggaga ggaatccttg gaagacatag agctatgggt tgggagaaac
     2041 cctgaaagca gggttgtggg aaccacatgt ctgagatgtg ctgcaatcaa gacgatatgg
     2101 cagaagcttc gtggaaaact cacttgggag cagggaccga aagcagcagt ctaagcccca
     2161 tga
//
