LOCUS       XM_039083543            1401 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus lymphocyte-specific protein 1 (Lsp1),
            transcript variant X5, mRNA.
ACCESSION   XM_039083543
VERSION     XM_039083543.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051336.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1401
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1401
                     /gene="Lsp1"
                     /note="lymphocyte-specific protein 1; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 19
                     ESTs, 7 Proteins, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 12 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:361680"
                     /db_xref="RGD:1306133"
     CDS             16..1020
                     /gene="Lsp1"
                     /codon_start=1
                     /product="lymphocyte-specific protein 1 isoform X3"
                     /protein_id="XP_038939471.1"
                     /db_xref="GeneID:361680"
                     /db_xref="RGD:1306133"
                     /translation="MEHQGLWRTGRNGEEEAEQRKRARTRLTTQWREEDEEEAAREQR
                     QRERERQLQDQDKDEEDEGGHFLEQPGQQALVSLKSSELDEDEGFGDWSQKQEPPRQQ
                     SWENEGTAEGSEPSPSESAEEKQTEDSSHQAKVHLEESNLSHSDPNIEDDVGGSGETE
                     EHLISHQARTPSPLALEDTAELSSPPLSPTVKLADRTESLNRSIQKSNSVKKSQPTLP
                     ISTIDERLQQYTQATESAGRTPKLSRQPSIELPSMAVASTKTLWETGEVQTQSASKTP
                     SCQDIVAGDMSKKSLWEQKGGSKISSTIKSTPSGKRYKFVATGHGKYEKVLVDEGSAP
                     "
ORIGIN      
        1 gagaacaatg ccaggatgga gcaccaaggt ctgtggagga caggtaggaa tggagaagag
       61 gaagcagagc aaagaaagag agcaagaacc aggctcacaa ctcagtggag agaagaagat
      121 gaagaagagg ccgcccgtga gcagcgccaa cgggagcgag agaggcagct gcaggaccag
      181 gacaaagatg aagaagatga aggtggccat ttcctggaac agccagggca gcaggcactc
      241 gttagcctga agtcctctga actggatgaa gatgagggtt ttggtgactg gtctcaaaag
      301 caggagccac caaggcagca atcctgggag aatgagggga ctgcagaggg gtcggaaccc
      361 tctccaagtg agagtgcaga ggagaaacaa acagaggaca gttctcacca agctaaagtc
      421 cacttggagg agtcaaacct gagccacagt gaccccaata tagaggatga tgtcgggggt
      481 tctggggaga cagaagagca tctgataagt catcaggcca ggacccccag ccctttggcc
      541 ttggaagaca ctgctgagct gagctcacct cccctgagcc ctaccgtcaa actggctgat
      601 aggacagaat ccctgaaccg ctccattcaa aagagcaaca gtgtgaagaa gtctcaacca
      661 accttgccca tttccaccat cgatgagcgc ctgcagcagt acacccaggc cactgagtct
      721 gctggccgaa ctcccaagct gtcccgccag ccctccatag agctgcccag catggctgta
      781 gccagtacca agactctttg ggagacagga gaggtgcaga ctcagtctgc ttccaagaca
      841 ccctcctgcc aggatatagt agctggagac atgagcaaga aaagtctgtg ggaacagaaa
      901 ggaggctcca agatctcatc caccatcaag agcaccccat ctggaaagag gtacaagttt
      961 gtggccactg gacacgggaa gtacgagaaa gtgctcgtgg atgagggctc agcaccatag
     1021 accacgtatg catcctggat agactccaac cagatgccac tcccagccct gaccaagaaa
     1081 ttgcttcctg ttgccagtct ggcccgctct cctgcctcca gcaacccagc tgccacttgc
     1141 ctctcctctt gctactggac cctccatctt ctatgccctc tcatcctctg accaaccctc
     1201 caactctgct tctcatcatc agctaaaggg accagcccat agaggagccg agagctccca
     1261 aggaaggatg gaggagagaa ggcaagcatc ccaaccagat ccaaggggta actgtcccca
     1321 tgctgaatgc tcaggactcc aagtcctgcc ctgtttatgg atccttcgtt ttgtgtaata
     1381 aagtgcattg agtgtcccct a
//
