LOCUS       XM_039082622            2066 bp    mRNA    linear   ROD 22-FEB-2024
DEFINITION  PREDICTED: Rattus norvegicus leucine-rich single-pass membrane
            protein 2 (Lsmem2), transcript variant X1, mRNA.
ACCESSION   XM_039082622
VERSION     XM_039082622.1
DBLINK      BioProject: PRJNA1074393
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_086026) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_036323735.1-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/09/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2066
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /bio_material="RGD 61498"
                     /db_xref="taxon:10116"
                     /chromosome="8"
                     /sex="male"
                     /tissue_type="kidney, spleen, liver"
                     /geo_loc_name="USA: Wisconsin, Milwaukee"
                     /lat_lon="43.05 N 88.04 W"
                     /collected_by="Rebecca Schilling, Melinda Dwinell"
     gene            1..2066
                     /gene="Lsmem2"
                     /note="leucine-rich single-pass membrane protein 2;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 1 mRNA, 1 EST, 1 long SRA read"
                     /db_xref="GeneID:689621"
                     /db_xref="RGD:1589957"
     CDS             440..1099
                     /gene="Lsmem2"
                     /codon_start=1
                     /product="leucine-rich single-pass membrane protein 2
                     isoform X1"
                     /protein_id="XP_038938550.1"
                     /db_xref="GeneID:689621"
                     /db_xref="RGD:1589957"
                     /translation="MLLSAKQQDSNLPGREAEPLSRKAEQRPGGIRRQGKAGEMPKCG
                     HWEPVKRPCARSPGPKLRVIPETVGNLEPNATDTVLPMQNQRHRPTLAPNHVQEVHLH
                     RVESISDLHSGGSLRPCLAEEAQAWEELLGVLPPSLCTQAACSPMCGRGGFLLLLALL
                     VFTCLALAIVAVYLSVLQSESLRVLAHTLRTQEETLLKLRLASLSQLRRLNSSEARAP
                     S"
     polyA_site      2066
                     /gene="Lsmem2"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      
        1 tctgggtgtg tataaagttg gtgtggtttt ccgagaagtt ccttctgtcc atgtgctagc
       61 agaggcttgc ccttggctga gccccatcac taagtaggta gtttaggccg gcccatccag
      121 gtcactctgc cccttttcat ggttcagagc tgccctctct aaatatagtt cagggaaagt
      181 gagctcaggc ctatttcaag accaggttgg gaggcagcca ggcctctcct agaatctgaa
      241 agaagccact gctgcctttg tccagttctg ctactgggca ctctcattgg gcctctgact
      301 acctaccaac tgccatgcct gaggagatcc aagaagagaa ttggaaacta cctaaaatgc
      361 ccagatagcc tcagagggaa gccatgggga ggaggcctca aagttgcatg aaactgtgga
      421 gagagagtgg actcctgcca tgctgttgag tgcaaaacag caggactcca accttcctgg
      481 aagagaggca gaaccactgt ccaggaaggc agaacagagg ccaggaggaa tacgcaggca
      541 aggcaaagcg ggggaaatgc ccaaatgtgg ccattgggag cctgtcaaga gaccctgtgc
      601 acggagccct ggacccaaac taagagtcat tcctgaaact gtagggaatt tggaaccaaa
      661 tgccacagat actgtgttgc caatgcagaa ccagaggcac aggccaacac tggctcctaa
      721 ccacgtgcag gaggtgcatc tgcatcgagt ggagtccatc agtgacctgc acagtggagg
      781 ctcactacgg ccctgtctgg ctgaagaggc gcaggcctgg gaggagcttc tgggtgtctt
      841 accaccgtca ctgtgcaccc aagctgcttg cagccccatg tgtggccgtg gggggttcct
      901 tctgctattg gcactgctag tgttcacctg cctggcacta gccatcgtag ctgtctacct
      961 aagtgtgctg cagagtgaat ccctgagggt gttggcacac acgctgcgca cacaagagga
     1021 gactctgctc aaattgcgtc tggctagcct cagccagcta agaaggctca actccagtga
     1081 ggctcgggca cccagctgag ataccatctg tatgtgagac tgtgatgggg gacaaaggga
     1141 cttctggcag gtctctgttc tcccactgat ggcctcatct gcactattcc ttggggagat
     1201 ttcttcacaa gcctgacgtt cctccacagc tgcctgtctc tcttgaccgc ttcaggccag
     1261 gcctgagcaa agctcttggt gccaaggccc tgctgtggtt agccaaaggt cagaggatgg
     1321 agcaccagtc ttttcctggt cccccgtcag caccctctgg tcacccccag ataggaagtt
     1381 cagaagtcta gaaatagctg tcccagctca gccacccact ctgccaggcc tcctagcagg
     1441 gggtccagcc tcagctcagg caagccaggc tgagttgggg aactacatgt cctgccatgg
     1501 aggacaaagg tgaggtagag ctagtcgggg ccaacctggg gtggcagacg gagggagggc
     1561 aggcacaaga ctcaggagag agaggggttg gggatttagc tcagtggtag agcacttgcc
     1621 tagcaagcgc aaggccctgg gttcggtccc cagctccgaa aaaaaagaaa agaaaaaaac
     1681 aaaaaaaaaa aaaaaaaaag actcaggaga gaggccacag ggggctaggt gttgcttaat
     1741 ctcttatctt taataaatca gcacacgcat ccattctagg cagctttgcc taccctaatg
     1801 ccacagtggc caggtgccag acctgaaagg aagcacccag ggggcaaggt ctaaaagaca
     1861 caagggacag ccctttctca ccctcaccac gaggaccagc acacatttgg tttcacctga
     1921 gacaggacag gaagaggcct cagccacatg gctgagtgca cgtacaaagg gcttgagtcg
     1981 taagtgtcct gatccctcga ccctcccaca tttgtctatt tttggtttca ttattaaaaa
     2041 aataaagtga caattactgg caggga
//
