LOCUS       NM_001173384            1180 bp    mRNA    linear   ROD 26-FEB-2024
DEFINITION  Rattus norvegicus LSM11, U7 small nuclear RNA associated (Lsm11),
            mRNA.
ACCESSION   NM_001173384 XM_001068848 XM_577085
VERSION     NM_001173384.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1180)
  AUTHORS   Yang XC, Torres MP, Marzluff WF and Dominski Z.
  TITLE     Three proteins of the U7-specific Sm ring function as the molecular
            ruler to determine the site of 3'-end processing in mammalian
            histone pre-mRNA
  JOURNAL   Mol Cell Biol 29 (15), 4045-4056 (2009)
   PUBMED   19470752
REFERENCE   2  (bases 1 to 1180)
  AUTHORS   Fu D and Collins K.
  TITLE     Purification of human telomerase complexes identifies factors
            involved in telomerase biogenesis and telomere length regulation
  JOURNAL   Mol Cell 28 (5), 773-785 (2007)
   PUBMED   18082603
REFERENCE   3  (bases 1 to 1180)
  AUTHORS   Wagner EJ and Marzluff WF.
  TITLE     ZFP100, a component of the active U7 snRNP limiting for histone
            pre-mRNA processing, is required for entry into S phase
  JOURNAL   Mol Cell Biol 26 (17), 6702-6712 (2006)
   PUBMED   16914750
REFERENCE   4  (bases 1 to 1180)
  AUTHORS   Pillai RS, Grimmler M, Meister G, Will CL, Luhrmann R, Fischer U
            and Schumperli D.
  TITLE     Unique Sm core structure of U7 snRNPs: assembly by a specialized
            SMN complex and the role of a new component, Lsm11, in histone RNA
            processing
  JOURNAL   Genes Dev 17 (18), 2321-2333 (2003)
   PUBMED   12975319
REFERENCE   5  (bases 1 to 1180)
  AUTHORS   Pillai RS, Will CL, Luhrmann R, Schumperli D and Muller B.
  TITLE     Purified U7 snRNPs lack the Sm proteins D1 and D2 but contain
            Lsm10, a new 14 kDa Sm D1-like protein
  JOURNAL   EMBO J 20 (19), 5470-5479 (2001)
   PUBMED   11574479
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC158836.1.
            
            On or before May 13, 2010 this sequence version replaced
            XM_577085.3, XM_001068848.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC158836.1, FQ223124.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMD00132261,
                                           SAMD00132262 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..1180
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="10"
                     /map="10q21"
     gene            1..1180
                     /gene="Lsm11"
                     /gene_synonym="RGD1565523"
                     /note="LSM11, U7 small nuclear RNA associated"
                     /db_xref="GeneID:501688"
                     /db_xref="RGD:1565523"
     exon            1..458
                     /gene="Lsm11"
                     /gene_synonym="RGD1565523"
                     /inference="alignment:Splign:2.1.0"
     CDS             8..1090
                     /gene="Lsm11"
                     /gene_synonym="RGD1565523"
                     /note="U7 snRNP-specific Sm-like protein LSM11"
                     /codon_start=1
                     /product="U7 snRNA-associated Sm-like protein LSm11"
                     /protein_id="NP_001166855.1"
                     /db_xref="GeneID:501688"
                     /db_xref="RGD:1565523"
                     /translation="MEEREWGARSARAGSPASPPSPRLDVSSYSFDPLLALYAPRLPP
                     IPYPNAPCFNNVAEYESFLKGGRTGRGRARGTGEPASAGTSTGTSTGAGTSSRARRRA
                     APTPDPERIQRLRRLMVVKEDTDGTAGSRRQGPGRSKKAPRNVLTRMPLHEGSPLGEL
                     HRCIREGVKVNVHIRTFKGLRGVCTGFLVAFDKFWNMALTDVDETYRKPVLGKAYERD
                     SSLTLTRLFDRLKLQDSKKEADSKSAVEDSTLSRYSQTSTWKVASVWGRGDTDRGSHR
                     RSRSVPSSLQASAREESRSELSGRTTRTEGSSVGGTFSRATTLSRGQSRKKKRKPKVD
                     YQQVFTRHINQIFIRGENVLLVHLAQ"
     exon            459..598
                     /gene="Lsm11"
                     /gene_synonym="RGD1565523"
                     /inference="alignment:Splign:2.1.0"
     exon            599..682
                     /gene="Lsm11"
                     /gene_synonym="RGD1565523"
                     /inference="alignment:Splign:2.1.0"
     exon            683..1144
                     /gene="Lsm11"
                     /gene_synonym="RGD1565523"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ttcaaacatg gaggagcgcg agtggggggc gaggtcggct cgcgccggca gcccagccag
       61 cccgcccagc ccgcggctgg acgtcagctc ctacagcttc gacccgctgc tggccctgta
      121 cgcgccgcgc ctgccgccca ttccttaccc caacgctccc tgcttcaaca acgtggcgga
      181 gtacgagagc ttcctgaagg gcgggcgcac cgggcgcggt cgagctcggg gcacgggaga
      241 gccggcctcg gcgggaacct ccaccggaac ctccacggga gccgggacct cgtccagggc
      301 ccgtcgccga gccgcgccca ccccggatcc cgagcgcatc cagcgcctgc gccggctcat
      361 ggtggtcaag gaggacacgg acggcacggc cgggtcgcga cgccagggcc cggggcgcag
      421 caagaaggca ccccgcaacg tgctcacgcg gatgcccttg catgagggta gccctctggg
      481 cgagctgcac cgctgcatcc gagagggggt gaaggtgaac gtgcacatcc gcactttcaa
      541 gggactccgc ggcgtctgca ctggcttcct cgttgccttc gacaagttct ggaacatggc
      601 cctcacagac gtggatgaga cctaccgtaa acctgtctta ggcaaagcat acgaacggga
      661 ttcttcgctg actctcacta ggctatttga tcggctgaaa ctccaagatt ccaaaaagga
      721 agcggattcc aagtctgcag tggaggactc caccctgtct cgttactccc agacatctac
      781 ttggaaggtg gcttcagtgt ggggacgagg agacactgac cgaggctcac acaggcgctc
      841 ccgctccgtc ccttcttccc tgcaggcatc tgcaagggag gagtccaggt ctgagctgtc
      901 agggaggact acacggacag aagggtccag tgtgggaggt accttctcca gggccaccac
      961 cctttcacgg ggccagtccc gtaagaaaaa gcgaaagccc aaggtggatt accagcaagt
     1021 gtttactcga cacataaatc agattttcat tcgaggtgag aatgtcctgc tggttcatct
     1081 tgcacagtga gcagctcagc cccacttgac ctttgggttt tagaaataaa gtgcatgaac
     1141 tgttaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
//
