LOCUS       NM_001109430            3679 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus leucine-rich repeats and transmembrane domains 2
            (Lrtm2), mRNA.
ACCESSION   NM_001109430 XM_001060528
VERSION     NM_001109430.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3679)
  AUTHORS   Um,J.W., Pramanik,G., Ko,J.S., Song,M.Y., Lee,D., Kim,H.,
            Park,K.S., Sudhof,T.C., Tabuchi,K. and Ko,J.
  TITLE     Calsyntenins function as synaptogenic adhesion molecules in concert
            with neurexins
  JOURNAL   Cell Rep 6 (6), 1096-1109 (2014)
   PUBMED   24613359
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from
            JAXUCZ010000004.1.
            
            On Nov 27, 2020 this sequence version replaced NM_001109430.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26360176.170228.1,
                                           SRR26360190.1364039.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760393 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-184               JAXUCZ010000004.1  154172494-154172677 c
            185-379             JAXUCZ010000004.1  154167447-154167641 c
            380-512             JAXUCZ010000004.1  154166856-154166988 c
            513-1103            JAXUCZ010000004.1  154163707-154164297 c
            1104-3679           JAXUCZ010000004.1  154158168-154160743 c
FEATURES             Location/Qualifiers
     source          1..3679
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="4"
                     /map="4q42"
     gene            1..3679
                     /gene="Lrtm2"
                     /note="leucine-rich repeats and transmembrane domains 2"
                     /db_xref="GeneID:680883"
                     /db_xref="RGD:1587001"
     exon            1..184
                     /gene="Lrtm2"
                     /inference="alignment:Splign:2.1.0"
     exon            185..379
                     /gene="Lrtm2"
                     /inference="alignment:Splign:2.1.0"
     exon            380..512
                     /gene="Lrtm2"
                     /inference="alignment:Splign:2.1.0"
     CDS             446..1555
                     /gene="Lrtm2"
                     /codon_start=1
                     /product="leucine-rich repeat and transmembrane
                     domain-containing protein 2"
                     /protein_id="NP_001102900.1"
                     /db_xref="GeneID:680883"
                     /db_xref="RGD:1587001"
                     /translation="MLAPGGGPEQRSKLVLQWRQLSWITCWIALCAVEVLPACPFSCT
                     CDSRSLEVDCSGLGLTTVPPDVPAATQSLLLLNNKLSALPSWAFANLSSLQRLDLSNN
                     FLDQLPRSVFQDLVNLTELQLRNNSIRTLDRDLLQHSPRLRHLDLSINGLAQLPQGLF
                     DGLLALRSLSLRSNRLQSLDRLTFEPLASLQLLQVGDNPWECDCNLREFKHWLEWFSY
                     RGGRLDQLACTLPKELRGKDMRAVPMEMFNYCSQLEDENSAGLDAPGPPCTKASPEPP
                     KPKPGAEPEPEPSTACPQKQRYRPVSVRRAIGTVIIAGVVCGIVCIMMVVAAAYGCIY
                     ASLMAKYHRELKKRQPLMGDPEGEHEDQKQISSVA"
     exon            513..1103
                     /gene="Lrtm2"
                     /inference="alignment:Splign:2.1.0"
     exon            1104..3679
                     /gene="Lrtm2"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 cagtttgtcg ctgaccccac agccccctcc ccggcagtgg cagctcagcc tgcgggtccg
       61 cctcttttac aggcgctgtc cagtctcccg ctgccctgaa ccagactgaa catccccacg
      121 ttctgcctgc caagctgccc gtgtccagct acctggtctg agcatcaggt cccattgcaa
      181 aaaggtcttc ctgtctccgg ggccagcagc agaagagcag gaacccctga gctgccgcag
      241 ttaccgattg gccagctggc agaagtccaa gcttgtaatt ctccccaagg tgggcagggg
      301 gcagtgaagc aactcacacc ctacctgtcg gcaggaacta ggaagggaag ggccgggcct
      361 ctgcctcccc acagctatgg actgacaagt ggcacatgct gaggggctct ctcacttcag
      421 agctgcagag agtgtgggct tcaccatgtt ggcaccaggc ggtggcccag agcagaggag
      481 caaacttgtc ttgcagtgga gacagctctc ctggatcacc tgctggattg ccctgtgtgc
      541 tgtggaggtg ctccctgcct gccctttctc ttgcacatgt gacagtcgca gcttggaggt
      601 ggactgcagt ggcctgggcc tcaccactgt acccccggat gtgccggctg ccacccaaag
      661 ccttttgctc ctgaacaata agctgagtgc cctgccaagc tgggctttcg ccaacctgtc
      721 cagcctgcag cgactggacc tgtccaacaa ctttctagac cagctcccgc ggtccgtttt
      781 ccaggacctg gtcaatctga cggagcttca gcttcggaat aacagtatca ggaccctgga
      841 cagggacctg ctccagcact ccccacgact tcgacatctg gatttgtcta tcaacggctt
      901 ggcccagctg ccccaggggc tttttgatgg gctcctggct ctacgatcct tgtcccttcg
      961 ctccaatcgt ctgcagagcc tggaccggct gacgtttgag cccctggcaa gcctgcagct
     1021 gcttcaggtt ggggacaacc cgtgggagtg tgactgcaac cttcgagagt tcaaacactg
     1081 gcttgagtgg ttctcttaca gaggggggcg cctggaccag cttgcctgca ccctccccaa
     1141 ggagctgagg gggaaggaca tgcgcgcggt ccccatggag atgtttaact actgttccca
     1201 gctagaggat gagaactccg ctgggctgga tgctccaggg ccaccatgca ccaaggccag
     1261 cccagagcct cctaaaccta aacctggggc tgagcctgag cctgagccca gcactgcctg
     1321 ccctcaaaag cagaggtacc ggccggtgag cgtgcggcga gccatcggca ccgtgatcat
     1381 cgccggtgtc gtgtgtggca tcgtctgcat catgatggtg gtggctgctg cttatgggtg
     1441 tatctacgct tccctcatgg ccaagtacca ccgggagctc aagaagcgcc agccgctgat
     1501 gggggacccc gagggtgagc atgaagatca gaagcagatc tcctctgtgg cctgagagct
     1561 gagggtctgg cccaggtagg acagcaagga gactccatgg gactgctacc aaaagggctg
     1621 cccttccctc catcacaggc cctgtctcag cctgacactg gcactgcctc cctcagctcc
     1681 ctggtcccaa tctctctcca agtctcccag aagcttccct ggggccagcg attcccgtgg
     1741 aaggcctgct ctgggcctct tgtctttggg acacctgagc tttcctgcag gcttctggcc
     1801 acagggagga aagaacctac attagagaca tcatctgcac tgagcgcttc cctcctgccc
     1861 agggctacca cagtggtgac tccctacctc ttgctcattt ccacttcagt ctgcattagg
     1921 gcctgggagg gagggacagg aggcccagag gtagatttct gtgactcctt tcaaagccag
     1981 aaagagattc ttaagtcctt gcagtgggaa gcttgtccag ctctcagcgg ctggtgccag
     2041 tgtgcaaaca ccccagccct gtgatctggg tccaatgctt agaaaaacca aagtgactat
     2101 aatgtccccc ttgggtggat gtcattatgt ccctttattt gctatagacc ccttggacta
     2161 cattgctcca ggtttatgaa ttctatccat actttttgtt ctagcgtgag gttttaagac
     2221 agggccttac tcttactcta actcactgtc agacacaggg catctctgta atggtcctgc
     2281 agatcaaagt cacacacaca cacacacaca cacacacaca cacacacaca cacatgcacg
     2341 cacgcacgga aacagagacc atgagaactt ggggcagaga cccactctct tgaacctaga
     2401 gaccacggct cctcttactt ccatgattac cgtcttccca tgttatcagg ggttggtcct
     2461 gaacagtaac acagggatcc tttgggaccc ttgaaagtgg gccaaagtat gcagctggag
     2521 gaattgccca ttgccatggc aaccctagca cctctcctgc taggtttacc agaggggtgt
     2581 gtgtgtgtgt gtgtgtgtgt gtgtgtgtgt gtgtgtgtgt gtgcgtgcgt gcatgacagg
     2641 ctccaggctt ctgagagctc agttgcagac cccctgggca ggtctgggag cctcctccct
     2701 gccaggttcc aggtacaccc agcagtttct acttctgcaa cctggcttct cccgtgtcct
     2761 ctgtcatctg catcctttgt ttgtgacctc aaaggctggg tctgggctgt gctctgagat
     2821 tggtggctca ccttaaggaa agcagatgtc aggctccaga aggctggctg ccttcaacac
     2881 atccccaaca gactgcggga acggaacagg atggctacat tctgttcgga gtccttggca
     2941 atggggctct ctttcccagg ggttcatcag ctctgcctgg tttcctggga gagtgcaatt
     3001 gcacctggac tacccaggcc aaacaatggc cacagtccta cctggtatgg agattctttt
     3061 ttttttttgg ttcttttttt ccggagctgg ggaccgaacc cagggccttg cacttcctag
     3121 gcaagcgctc taccactgag ctaaatcccc aacccctggt atggagattc ttactcctgg
     3181 gctgtgcacg ttttcggggt cactgccctg tcttctaaac tgtcccctcc ttagagactg
     3241 gatacctctg taggagatgc tagactgata tcttgccctg ggaagggtct tggtagtagc
     3301 cggatagaca cgtaggcact gatgatacac ctatgagcat cagagcaacc tctcagccct
     3361 cctcctggtc ctctgccacc ttctccacta gcaggggtga gtacagggag tctcgggaga
     3421 gcctccaagg ttgtcctctg gctggtagac agagagcaca ggctgccgtt caggatcata
     3481 ggatcctcta ggctgggcca cagccttcct tcctcttttg gctggtgggc caatcccaga
     3541 accgggattt tctaagggcc tgggggaggg agggtgttgt cagtggtgat atctttagcc
     3601 tgagacagaa gatttttaaa ggcaaaatta tatttctggt ttgtcgtttc agaagaccaa
     3661 taaagactat tttcctatg
//
