LOCUS       XM_039095222            2213 bp    mRNA    linear   ROD 22-FEB-2024
DEFINITION  PREDICTED: Rattus norvegicus leucine-rich repeats and transmembrane
            domains 1 (Lrtm1), mRNA.
ACCESSION   XM_039095222
VERSION     XM_039095222.1
DBLINK      BioProject: PRJNA1074393
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_086034) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_036323735.1-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/09/2024
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 16% of CDS bases
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..2213
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /bio_material="RGD 61498"
                     /db_xref="taxon:10116"
                     /chromosome="16"
                     /sex="male"
                     /tissue_type="kidney, spleen, liver"
                     /geo_loc_name="USA: Wisconsin, Milwaukee"
                     /lat_lon="43.05 N 88.04 W"
                     /collected_by="Rebecca Schilling, Melinda Dwinell"
     gene            1..2213
                     /gene="Lrtm1"
                     /note="leucine-rich repeats and transmembrane domains 1;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 3 Proteins"
                     /db_xref="GeneID:100360666"
                     /db_xref="RGD:2321691"
     CDS             1..1239
                     /gene="Lrtm1"
                     /codon_start=1
                     /product="leucine-rich repeat and transmembrane
                     domain-containing protein 1"
                     /protein_id="XP_038951150.1"
                     /db_xref="GeneID:100360666"
                     /db_xref="RGD:2321691"
                     /translation="MALQTYNPSTVTVGLSISKDRNQVSAGLLWSEGASLRKTKCDLK
                     KAVCSTSLLNKKQEDDGSLIIYEWLLGALLLVSSVGILLPGVGSCPKKCLCHPSSNSV
                     DCSGQGLSTIPPELPPWTVTLLLQDNRIHWLPALAFKSVSLLTTLNLSNNSLSNLAAE
                     AFYGLAHLQVLNVTQNSLLSIESSFAQVMPGLRELDLSSNSLSVLPTSLGKPWENLTM
                     FAVQQNHLLHLDRELLEAMPKLRLVLLKGNPWKCDCHLLGLKLWLERFIFEGGETDGA
                     ICRLPEPWKGKDLLSIPHELYKPCPLRHQNLVPSLVQQPGSVPQDAQKSPENNSGQHD
                     PLECENRPKPKPTNLRHAVATVVITGVVCGIVCLMMLAAAIYGCTYAAITAQYQGRPL
                     APTRKSEKMGSEEPMDSSPA"
ORIGIN      
        1 atggcactac agacctataa ccctagtacg gtgactgttg gtttgagcat atctaaagac
       61 agaaaccagg tttctgcggg gcttctgtgg agtgaaggag cttcactgag gaaaaccaag
      121 tgtgatctga agaaggctgt gtgctccact tcacttctta ataagaagca agaagatgac
      181 ggaagtctga tcatctatga atggctgtta ggtgctctgc tgctggtttc cagtgtgggt
      241 atcctgctcc caggtgtggg cagctgcccc aagaaatgtt tgtgtcaccc atcttcaaac
      301 tctgtggact gcagtggcca ggggctgtca acgatccccc ctgaactacc cccatggacg
      361 gtaacgctgc tcttacagga taaccggatc cactggcttc ctgctcttgc atttaagtct
      421 gtatcactgc tcaccacctt aaatttatct aacaactctc tttcaaatct ggctgcagag
      481 gctttctatg gacttgccca cttgcaggtt ttaaacgtaa cccagaattc cctgctttct
      541 atagaaagca gttttgccca agtcatgcct gggctcaggg agcttgatct atcatccaac
      601 agcctcagtg tcctccccac atctctgggc aagccttggg agaacctaac catgtttgcc
      661 gtgcaacaga accatcttct acatctggat cgtgaacttc tagaggccat gcccaagctg
      721 aggctggtac ttcttaaggg caacccttgg aaatgtgact gccacttact gggtctgaaa
      781 ctctggctgg agaggttcat ttttgaaggg ggagaaacag acggtgccat ctgcaggctg
      841 cctgaaccct ggaagggaaa ggatctcctc tccattcctc acgaactata caaaccctgt
      901 cctctacgtc atcagaattt ggtaccctca ctagttcagc agcctggttc tgttccgcaa
      961 gatgcccaga aatctcctga gaataactca ggtcagcatg atcccttgga gtgtgagaac
     1021 agacccaaac caaagccaac caacctgcgc catgctgtgg ccactgtggt catcactggg
     1081 gtggtgtgtg ggatcgtttg tctcatgatg ctggcagctg cgatctatgg atgtacctac
     1141 gcggctatca cagcccaata ccaagggaga cccttggcac caaccaggaa gtctgagaag
     1201 atgggaagcg aggaaccaat ggatagttca ccagcctgag agccttcacg tccaaggccc
     1261 ccttgatcac tgagggccag aagacatgac tgagtgtgct tgatgtgttc attcctcctg
     1321 acccatgttt cgtcttccaa accatctaag gaaaaaaaaa ctgtgtccaa aaaataaaac
     1381 aaaaagtact cagtgggaag aaatttatgc cacaactttt aactaccata gataaaatag
     1441 agacacttct atcttgcaac gtgcgtatct tgaagatatg gcaagaagtc tatgggtggg
     1501 aacataaagg agaatggggc catctctttt gtacttgtct ctggattaag ctgcttctgc
     1561 aaagcaacaa gaattctgcc atgtgtgtca ataggcattt ttaggagttc tagggccacc
     1621 agttggagag cctggaatag gttggtgtgc ttgcctgacc cgtactggat gcctctataa
     1681 tcagttcata ccagattggt gggactttta tatgctgtgt atgttacata tttagtggaa
     1741 atgtctgttg cttgggaatt tcatagctgg acacaagagt cagattatat ttaatttttc
     1801 taagtcagaa aaccatttgg ggctctctaa gctacagggg aagacaaagg ttccatgtct
     1861 ggataatggg actcaggcct agagcctggg caatgttctg atgtgaaggg agacagagag
     1921 aatggaaact agaatacagg acagatatta tcaagaggcc ataaccgacc aactggaacc
     1981 ttaccctaga actctcacga cagggatgga tttaggttag gctgaacagc agctgtgtct
     2041 ctgcgtctgc atacgcagtg cacagagggc atgggtttgt acagccacac ccacacataa
     2101 acaccctcgg agcaatcagc ctacacacta atgaaatgca gccatgacgg gtgggagcca
     2161 gtagctgttg atcactgccc agattgtatg ctcaacactc tgggatagga aat
//
