LOCUS       XM_230550               4535 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus leucine rich repeat neuronal 4
            (Lrrn4), mRNA.
ACCESSION   XM_230550
VERSION     XM_230550.10
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051338.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_230550.11.
            
            On Jan 21, 2021 this sequence version replaced XM_230550.9.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4535
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..4535
                     /gene="Lrrn4"
                     /note="leucine rich repeat neuronal 4; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 27 ESTs, 1 long SRA read, 4 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 16 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:311443"
                     /db_xref="RGD:1305256"
     CDS             227..2434
                     /gene="Lrrn4"
                     /codon_start=1
                     /product="leucine-rich repeat neuronal protein 4"
                     /protein_id="XP_230550.4"
                     /db_xref="GeneID:311443"
                     /db_xref="RGD:1305256"
                     /translation="MWWTLMLQLLQLLLQLQMVQSHSLEGLSQHQIPLFRLTQLGVWD
                     SHDRRPNDSSCEGLPAAGATTLNLANRSLERLPSCLPRTLRILDGSHNLLHALSEPVL
                     RRLPELSVLTLHHNRISVLHWDGSTPTGLHELDLSHNLLAELPPCSGLSRSSLSLLSL
                     AGNPLQALQPRTFACFPELQFLNLSCSKLGHIAQEAFAGVDGGPLEALELLDLSGTNL
                     ERVESEWIRNLPKLKSLYLRKMPRLKTLEGDIFKMTPNLRLLDCQESPALTSVHTEIF
                     QDTPNLQVLQLQNCNLSSFGPWTVNSSQVLLVSLFGNPLICSCELAWLLLDASKTVLH
                     RAADTTCEPALGSKGPFSGPLPLSHLSNVCRSDQSTTLLASNPPHDHHSVSAPWTQEP
                     SIGQSRALSAQPEGSQQNITKVPSLTMAPPTQGSRTYRDTSEETAQSTTNSEIVYSPS
                     RALPGTASSGAEQTDTYILEPSISSASTPLVSKYLEPSPTSPNPRSISQINQRTQANP
                     KAFHTDPPQDEIPVLLLDDDSEEETTQDQVAAPRQDVSCDYHPCRHLQTPCAELQKRL
                     RCRCPGLSGQDTIPDPPKLQGVSEMTDTSVLIHWCAPNSVVLWYQIHYLAEGGSGNRS
                     VTDIYATARQHPLYKLSPGTTYHVCVLAANRAGLSQPQTSGWGRSCATFTTKPSSVVI
                     FWGLCTASGLLLVSTLVLSVCLWRQRWKPHRQFHDTHLVAFKNPARSEEVTQW"
ORIGIN      
        1 ggatgaaaaa ccacaaaagt cttggtggag aaggaggggc ttcagggctg aagtgtctca
       61 agctcctcct ggagggagct ggaggagggg cagccgggac ccaggcttct tccctctgac
      121 cttcagagct gacctgggaa gtcactggtt cctgcaaaag actgaggacc taagggggtg
      181 ctacatccca gtgggacagt ttccagtctt tccctagaga tttaagatgt ggtggacgct
      241 gatgctgcaa ctgctgcagc tcctgcttca actgcaaatg gtgcagagtc acagcctgga
      301 gggactttcc cagcaccaga tccctctctt ccgactcact cagctgggag tctgggacag
      361 ccacgaccgc cgccccaacg actcttcctg cgaggggctc ccggccgcgg gagccaccac
      421 cctgaaccta gcgaaccgca gcctggagcg cctgcctagc tgcctgccgc gcacgctgcg
      481 catcctcgac ggtagccaca acctgctgca cgctcttagc gaacctgtgc tccgccgcct
      541 acccgagctg agcgtgctca cgctgcacca caaccgcatc tccgttctgc actgggacgg
      601 cagcacaccg accgggctgc atgagctcga cctcagccac aacctgctgg ccgagctgcc
      661 gccctgctcc gggctttcga ggagcagcct gagcttgctg tcgctggccg ggaacccact
      721 gcaggcgctg cagccacgga ccttcgcatg cttcccagag cttcagtttc tcaacctctc
      781 ctgcagcaag ctgggccaca tcgcccagga ggcgttcgcg ggggtggacg gtgggcccct
      841 ggaggcgcta gagctcttgg acctgagtgg cacgaacctg gaaagagttg agtctgagtg
      901 gatcagaaac ctgccaaagc tcaaatccct ctacctgaga aagatgccca ggctgaagac
      961 actggaggga gacattttca agatgactcc caacctgcgg ctgctggatt gtcaagaatc
     1021 cccagcgctt acttctgtcc acacggagat ctttcaagac acacccaacc tgcaggtcct
     1081 tcagctccag aattgcaact tgagctcctt tggtccttgg actgtgaatt cctcccaggt
     1141 cttgttggtc agcctctttg gcaaccctct catttgcagc tgtgagctgg cttggcttct
     1201 cttggatgca agcaaaactg tcttacacag ggcagcagat accacatgtg agcctgcttt
     1261 aggatccaag ggccccttct caggacctct ccccctttcc cacctgtcta atgtgtgcag
     1321 gtcagaccaa agcaccaccc tcctggcttc aaacccaccc cacgaccatc actcagtttc
     1381 tgcaccatgg acacaggagc cttccattgg acagagcagg gccctgtctg ctcagcctga
     1441 aggaagccaa caaaatatca ccaaagtccc ctccctcacc atggctccac ccacacaagg
     1501 atcacggacc tacagagata cttcagagga aaccgcccag tctaccacta actctgagat
     1561 agtttacagt ccttccaggg ctctgcctgg cactgccagt tcaggggcag agcagactga
     1621 cacatatatc cttgagccca gtatctcatc tgcctctacc ccattggtca gcaaatacct
     1681 tgaaccctcg cctacttcac cgaaccccag aagcatatct cagatcaacc agaggaccca
     1741 agctaacccc aaggctttcc acacagatcc tccacaggat gagattccag ttttgctgtt
     1801 agatgatgac agcgaggagg agacgactca ggaccaggtg gcagcacctc gtcaggacgt
     1861 ctcttgtgat taccacccct gcaggcatct gcagacccca tgtgcagagc tgcagaagcg
     1921 cctcagatgc cgctgccctg gtctcagtgg acaggatacc attccagacc ctcccaagct
     1981 gcagggggtg tcggagatga ctgacacgtc agtgctcatc cactggtgtg cccccaactc
     2041 agtggtgctc tggtatcaga tccattactt ggcagaagga gggtctggga accgatcagt
     2101 aacggacatc tatgctactg cccgacagca ccccctgtac aagctgtcac caggcaccac
     2161 ctaccatgtg tgtgtactgg cagccaacag ggccggcctg agccagccac agacctcggg
     2221 ctggggtagg tcatgtgcca ccttcacaac caagcccagc tccgtggtca tcttctgggg
     2281 actgtgtact gccagtggtc tgttactggt tagcaccctg gtgctgtctg tgtgtctctg
     2341 gaggcagcgg tggaagccac acaggcagtt ccatgacaca cacctggtgg ccttcaagaa
     2401 cccagccagg tctgaagaag taactcagtg gtagtgactt cctggcctgt acaaggcttg
     2461 ggtttatctc cagcattcgt tggaggcctt gcgtttattt ccagcaatca gagtaaacaa
     2521 accatcagcc tttgaccacc tgtggaggct ccagaactta aattatccca gcgtctctca
     2581 ctcaaagcac atctgcttgc aggaatgtta tgttgcctaa ggataacatg agttccacat
     2641 tctctgaagc caccacatct caagcccaca cggaactaca ctgcttcctc ctcttgaagg
     2701 aacgagtgtc accgttgcat gtagttttaa gagaccatgc ttgctccttg cctagtcttc
     2761 ttgccaggtg ctccgactta gctcccgcct ccgagatcac actgctgctg gccccacttc
     2821 taccctgccc gttccaaggc cagggtggct acattacttt tctactgaca aaacaccgtg
     2881 accaaagcaa cttaagggct atttacttgt ggttccagag ggtaagaagc tggcagcagg
     2941 taggaacagc agttggggct aaaagttgac agttcaaatc ttgaatcaca agcaaaagct
     3001 tttggcaaac tgggaatggc atgtgacctt gaaagctcag agcctgtccc cagtgacgca
     3061 cttttttcct aaaccaaaaa ttcaaaacac ctgagactgg ggacattctc atccaaacca
     3121 ccaccgtggc taagctgatg ttctgggatg caaagacagg accagcaaca gttgcacaat
     3181 gcaataaagc ctatgtttct gtctctaact tctctttcaa cagttcaaca aatggctaag
     3241 gccttcctgc atagttccac atgttgggga atgtttttac gcagtgtatt ggaatgctga
     3301 tttctgtacc tggagaccat ctgggtgcag tccagaccct ggccatcatt acaaaacatt
     3361 ttctgactca gtattttgta agacgttgtt ctcctctatg tctgattggt tagagctgac
     3421 cagcctatat cggggaggac agttaaggct agacttctaa tcccagtgag gggtcctggg
     3481 tggagagtgt tgagtggcca tgaggacaca gatgggtagg aacaaccagg gagagactag
     3541 gaaggcaggt aatggggcac atggctgggt actaggcagc acagcagggc tagaataaat
     3601 cagaacccta cctagctgta gtgcaagaag cttatcaata aatataccag gtctccttgt
     3661 catcatttca aagcaagggc aggcccagaa aagccctgaa cttttacatc cacattatac
     3721 ttaggtcaag cgaaggagaa agggaaacca agggtttcta gtatgtggag gagccccctg
     3781 gctcctgacc ctacctgtac cccactactc taaacacaag ggtagagcag gtctttaagg
     3841 tcacatgtct ggaaccagta agttttacaa tgtaggggga agtgctgcat ctaagtgcac
     3901 ttcatagatg aggaaacgta tgcagccaca taaacacaca ccacaaccac cgatgggaag
     3961 acgcagattt ttccagctct tttattttct tatcatgtta acaatagaag attccccaaa
     4021 gttaaaaaaa aaaaaacttt gaaaaataga aagtttcata ctatttacat gacatatgag
     4081 tacaggttcc agtatcatac aaacgtccca tgagaaacag tgagaaggca tgatgtaatt
     4141 ctctgccttt tagatgcgat gcctaatact cgtggtctcc cttctgactc ctgtgttgtc
     4201 tgctatcctg atacagaaac tgtttggtaa ctgagaggct ggaactactg gtaaacttca
     4261 atgccttcta ttttgtttgc tcttttttat tttcaaaact tactgcattt gaatgctctg
     4321 tatcccttta cacttcccac agctaggtct actctcactt ctcaaatgac caagcattag
     4381 tcacatgaac tgctatgtgt ttatagattt aaaatttaag cataacaata tatagccatg
     4441 ccgtgtgtgg tatgcattta atctcgggga ttccctcctg ctttcctttg tttctatgtt
     4501 accaactgtt tttttaaaaa cattaaaaaa aaaaa
//
