LOCUS       NM_001177368            3281 bp    mRNA    linear   ROD 03-APR-2024
DEFINITION  Rattus norvegicus leucine rich repeat neuronal 2 (Lrrn2), mRNA.
ACCESSION   NM_001177368 XM_001060363 XM_222670
VERSION     NM_001177368.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3281)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000013.1.
            
            On or before May 13, 2010 this sequence version replaced
            XM_222670.4, XM_001060363.2.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26360176.75024.1,
                                           SRR26360194.1560705.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760393, SAMEA5760433
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-287               JAXUCZ010000013.1  46874048-46874334
            288-3281            JAXUCZ010000013.1  46931551-46934544
FEATURES             Location/Qualifiers
     source          1..3281
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="13"
                     /map="13q13"
     gene            1..3281
                     /gene="Lrrn2"
                     /note="leucine rich repeat neuronal 2"
                     /db_xref="GeneID:289020"
                     /db_xref="RGD:1305482"
     exon            1..287
                     /gene="Lrrn2"
                     /inference="alignment:Splign:2.1.0"
     exon            288..3281
                     /gene="Lrrn2"
                     /inference="alignment:Splign:2.1.0"
     CDS             494..2746
                     /gene="Lrrn2"
                     /note="leucine rich repeat protein 2, neuronal;
                     leucine-rich repeat neuronal protein 2"
                     /codon_start=1
                     /product="leucine-rich repeat neuronal protein 2
                     precursor"
                     /protein_id="NP_001170839.1"
                     /db_xref="GeneID:289020"
                     /db_xref="RGD:1305482"
                     /translation="MRLLVAALLLSWAASTNTAVPVVPWRVPCPPQCACQIRPWYTPR
                     SSYREATTVDCNDLFLTAVPPGLPAGTQTLLLQSNSISRIEQTELGYLANLTELDLSQ
                     NSFSDARDCDFQALPQLLSLHLEENQLSRLEDHSFAGLTRLQELYLNHNQLCRISPRA
                     FEGLGNLLRLHLNSNLLRTIDSRWFEMLPNLEILMIGGNKVDAILDMNFRPLANLRSL
                     VLAGMSLREISDYALEGLQSLESLSFYDNQLAQVPKRALEQVPGLKFLDLNKNPLQRV
                     GPGDFANMLHLKELGLNNMEELVSIDKFALVNLPELTKLDITNNPRLSFIHPRAFHHL
                     PQMETLMLNNNALSALHQQTVESLPNLQEVGLHGNPIRCDCVIRWANATGTHVRFIEP
                     QSTLCAEPPDLQRRPVREVPFREMTDHCLPLISPRSFPSSLQVASGESLVLHCRALAE
                     PEPEIYWVTPAGVRLTPARSGRKYRVFPEGTLELRRVTAEEAGLYTCVAQNLVGADTK
                     TVSVVVGHAPFQPGRDKGPGLELHVQETHPYHILLFWAPPPNIVSTNLTWSSAASLRD
                     HETTALARLPRGTHRYNITRLLPATEYWACLQVAFADAHTQLACVWARTKEASPCHRA
                     LGDRPGLIAILALAVLLLAAGLAAHLGRGQSKQRVGEKPLLPVWAFWGWSAPSVRVVS
                     APIVLPWNPGRKQPRCQMGKQCHHHCLNIAEAPPGLSSREITRTTLHQTGRDLGQMPA
                     RNAALIDPHA"
ORIGIN      
        1 gcggcggggg cgccgggcgc cgcgggcctg ctccgtgctc cgcagacgcg cggcgctccg
       61 ggagcgccgg ccctggccgc cagcctccgg ccgcggcgcg caggattggg gacacagtca
      121 ttctgctgac gccctcgcag gctgggcttt gcgaccactc ccaagacaag tgcaggttgg
      181 ggaaggcgcc cggcgagcct ccctggcctg ggtggcagcc cgctgtggag cagcgatccc
      241 agccgggcgg cgagtggcag acatacatat aggacagcgc ccgcgcgggc cacccgacga
      301 ggaaatgagt gggcagtcca agtccagtgc acgaagatga ggacccacac ccaggacggc
      361 atgaagtgat gcccacccac cctgtgtaga atgactgccc tgggagggtg gttccccaga
      421 ccctggcagg gctgctgaac ctcagcctgc aagtcgtgaa gagcaggact gtcctctgcc
      481 ttccagctcc accatgcggc tcctcgtggc tgccctcttg ctatcttggg cggccagtac
      541 caacacggca gtaccagtag taccctggcg tgtgccctgc ccccctcagt gtgcctgcca
      601 gatccggccc tggtacactc cccgctcatc ttaccgtgaa gccaccactg tagactgcaa
      661 tgacctcttc ctgacagcag tgcccccagg gctccctgcg gggacacaga ccctgctact
      721 gcagagtaac agcatcagcc ggatagagca gactgagctt ggctacttgg ccaacctcac
      781 agagctggac ctgtcccaga acagcttctc agatgcccga gactgtgatt tccaagccct
      841 gcctcagctg ctgagcctac atctagaaga gaaccagctg agccggctgg aggatcacag
      901 ctttgccggg ctgaccagac tgcaggagct ctatcttaac cataaccagc tatgccgcat
      961 ctccccgagg gccttcgaag ggctcggcaa cctgctgcga ctgcatctca attccaacct
     1021 gcttaggacc atcgacagcc gctggttcga gatgctgccc aacttggaaa tcctcatgat
     1081 tggtggcaac aaggtggatg ccatcttgga catgaacttc cggcccctgg ccaacctgcg
     1141 cagcctggtg ctggcaggta tgagcttgcg ggagatctcc gactatgctc tggagggact
     1201 gcaaagcctg gaaagcctct ctttctatga caatcagctg gcccaggtgc ccaagcgagc
     1261 attggagcag gtgcctgggc tcaagttcct agacctgaac aagaacccat tgcagcgggt
     1321 aggccccgga gacttcgcca acatgctgca cctcaaggaa ctaggactga acaacatgga
     1381 ggagctggtc tccatcgaca agttcgctct ggtaaatctc cctgagctga ccaagctgga
     1441 catcaccaat aacccacggc tttctttcat ccatccccgc gcctttcacc acctgcccca
     1501 gatggagact ctcatgctca acaacaacgc tctcagtgcc ttgcaccagc agacagtgga
     1561 gtctctgccc aacctacagg aggtggggct ccacggcaac cccatccgtt gtgactgtgt
     1621 catccgctgg gccaatgcca caggcaccca cgtccgtttc atcgaaccac agtctaccct
     1681 gtgtgctgag cctccagacc tccagcgccg cccagtccgg gaggtgccct tccgagagat
     1741 gacagaccac tgcctgcctc tcatctctcc ccgaagcttc ccctccagcc tgcaggtagc
     1801 cagtggagag agcttggtac ttcactgtcg ggcactggct gaaccagagc ctgagatcta
     1861 ctgggtcact ccagctggag ttcgactgac acctgctcgc tcaggcagga agtaccgggt
     1921 gtttcctgag gggaccctag agttgcggag ggtgacagca gaagaggcgg gtctatacac
     1981 ctgtgtggcc cagaacctgg taggggctga cactaagaca gtcagtgttg tggttggcca
     2041 tgctcccttc cagccaggca gggacaaagg accaggcctg gagctccacg tgcaggagac
     2101 acacccatat cacatcctgt tgttttgggc gcccccaccc aatatagtct ccaccaacct
     2161 cacctggtct agcgccgcct ccctccggga ccatgaaact actgctttgg ctcgactgcc
     2221 gcggggcacc caccgctaca acattacccg cctccttccg gccacagagt actgggcctg
     2281 cctgcaagtg gcctttgctg atgcccacac ccagttggct tgtgtttggg ccaggactaa
     2341 agaggcctct ccttgccaca gagccctggg ggaccggccc gggctcatag ccatcctggc
     2401 tcttgccgtc ctcctgctgg cagctgggct tgcagcccac cttggcagag gccagtccaa
     2461 gcagagggtg ggtgagaagc ctctccttcc ggtctgggct ttctggggct ggagcgcccc
     2521 ctctgtccga gtagtgtctg cacccattgt cctgccctgg aatccaggga ggaagcagcc
     2581 cagatgtcag atggggaaac agtgccacca ccattgtctc aacattgctg aagctccgcc
     2641 aggtctcagc agtagagaaa taactaggac aactctacac caaacgggac gtgatctggg
     2701 ccagatgcct gctaggaacg cggcattgat tgatccacat gcttgaggtc tggctgcttg
     2761 accgagaaag atggggttct gcagctcctg gggatgcacc cgcagccccc aaatagttgc
     2821 tgttgccttc tggggtcctc agttgcgatt ctgagaagtg tatccaagga acaggaagga
     2881 ctctgtctag agcttcctaa tgccccagag gcttctgggc ctcagcttgg ctgtcccctg
     2941 cctgtgtccc taggcccttg gcccacagga tatgcccctc ctcttctctt tctttgtaca
     3001 gtctcagttg cttgctcgtc cccctcctgg gcaagggctg aaagaggctt ctcctactgt
     3061 cttgagagcc tgccccaaaa gtgggagtgt ccccagctgg atctgaagga tatttgggga
     3121 gagaggtatc cagggatgcc tcatctcata gcctgggctc tgaagttgac tttctatagg
     3181 cagttttgta cctttgtgga gaaatgtgtc acctgtcccc aacccaattc actcttttct
     3241 cctgttttgt aaaaaataaa aataaacaat accaacaaca a
//
