LOCUS       XM_039103607            2039 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus leucine-rich repeats and IQ motif
            containing 4 (Lrriq4), mRNA.
ACCESSION   XM_039103607
VERSION     XM_039103607.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051337.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039103607.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2039
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="2"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2039
                     /gene="Lrriq4"
                     /note="leucine-rich repeats and IQ motif containing 4;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 1 EST, 3 Proteins, and 98% coverage of the
                     annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:100363341"
                     /db_xref="RGD:2323202"
     CDS             16..1881
                     /gene="Lrriq4"
                     /codon_start=1
                     /product="leucine-rich repeat and IQ domain-containing
                     protein 4"
                     /protein_id="XP_038959535.1"
                     /db_xref="GeneID:100363341"
                     /db_xref="RGD:2323202"
                     /translation="MWLLGFELRTSGRAVSALTTEPSLLSFLLLNTGSRCGQKGLELT
                     LVLPRLPEFEIIDTFKSLTKELLRQEHLTQAPQRNDPHRVTDRTFFIDGSNQNLKTIP
                     PEILALKELEEVHLENNQISEIPQGIQHLEKIKVLYLHNNSLQNLCQELGSLSNLESL
                     DLSGNLLVLSSLQVICRLRTLRELRLYNTGLTEVPSGICKSLHHLELLGLSENYLESL
                     PKEIVNQTKLREIYLKQNHFENFPCDLCVLCNLEVIDLDDNKLKTIPEDIGHLVRLQK
                     FYVASNHLMGLPESLSHCRKLSVLDLTHNSIHSLPYSLEQLTELTEVGLSGNRLEKVP
                     RLLCNWVSLHLLYLRNTSLHGLRRSFKHLVNLRFLDLSQNHIDHFPVQICTLKDLEIL
                     ALDDNKVKQLPPAISSLSKLKILGLTGNDFVSFPEEIFSLVSLEKLYIGQDQGSKLSS
                     LPENIKKLTNLKELYIENNQLEQLPASLGLMPNLEVLDCRHNLLRQLPDAICQTRDLR
                     ELLLEDNLLSRLPENLDHLVNLKVLTLTDNLMEDPPMEVCEQGNEAIWRHLKENRIRK
                     VMATKIQAWWRGIMVRKGYGSYEELLKARKKGKSPPKDKKGKAAPKGKPAKGNKK"
ORIGIN      
        1 tggttgtgag tcaccatgtg gttgctggga tttgaactca ggacctctgg aagagcagtc
       61 agtgctttaa ccactgagcc atctctcctt tctttccttc ttctaaacac agggtctcga
      121 tgtgggcaga aaggccttga actcacactc gtccttcctc ggctccctga atttgaaatc
      181 attgacacct tcaaaagctt gaccaaggaa ctactgagac aagaacattt aacccaggct
      241 cctcagagaa atgaccccca ccgggtcact gatagaacat ttttcattga cggttccaac
      301 cagaatttga agaccatccc gccagagatt ttggcattaa aagaattaga agaagtgcat
      361 ctggagaata accagatctc ggaaattccc cagggcattc agcacttaga gaaaatcaag
      421 gtcctctacc tgcataacaa cagcctgcaa aatctgtgcc aggagctggg gtcgctgagc
      481 aacctggagt cgctggacct gagcggcaac ctgctggtcc tctcctcgct gcaggtcatc
      541 tgccgcctcc gcacccttcg cgagctgagg ctctacaaca ccggcctgac cgaggttccc
      601 tcgggcatct gcaaatccct gcaccaccta gagctgttag gtctgtcaga gaactacctg
      661 gaatcgctgc ccaaggaaat cgtgaaccag accaagctca gggagatcta cctgaagcag
      721 aatcacttcg agaatttccc ttgcgaccta tgtgtcctct gcaacctgga ggtgatcgat
      781 ctggacgaca acaagctgaa gaccatcccg gaagacatcg ggcacctagt gaggctgcag
      841 aagttctacg tggcgtctaa ccacctgatg ggtctaccgg agtctctgag ccactgccgc
      901 aagctgtcgg tgctggattt gacccacaac tctatccatt ccctgcccta cagcctggag
      961 caactcacgg agctcacgga ggtggggctg agtggcaacc ggctggagaa ggtgccgcgc
     1021 ctgctctgca actgggtatc gctgcatctg ctgtatctgc gcaacaccag cctgcacggg
     1081 ctgcggcgct ccttcaagca cctggtcaac ctgcgcttcc tggacctcag ccagaatcac
     1141 atagatcact ttcccgtgca gatctgcaca ctcaaggacc tggagatcct ggcgctggat
     1201 gataacaaag tgaagcagtt accaccagcc ataagttcgc tttctaaact gaagatcctc
     1261 gggctcacag gaaatgactt tgtgtccttc ccagaggaaa tcttttcctt agtgtccctg
     1321 gagaaattat atatcggaca agaccagggg tctaagcttt cctctttgcc agaaaacatc
     1381 aagaaactga cgaatcttaa ggagctgtac atagagaaca accaactgga acagctgccg
     1441 gcatccttgg ggttaatgcc aaacctggag gttcttgact gccggcataa ccttcttagg
     1501 caactcccag atgccatttg ccaaactcga gatttgagag agctcctgct ggaagacaat
     1561 ttactcagtc gcctcccgga gaaccttgat cacctggtga atctcaaggt cctaacgctg
     1621 accgacaacc tcatggagga ccctcccatg gaagtgtgcg agcagggcaa cgaagccata
     1681 tggagacacc tgaaggagaa cagaatcagg aaagtgatgg ccaccaagat tcaggcgtgg
     1741 tggcgtggaa tcatggtccg gaaaggatat ggatcctacg aagagctact aaaagcccgg
     1801 aagaaaggaa aatcccctcc aaaggataag aaaggaaaag cagccccaaa aggaaaaccc
     1861 gcaaaaggga ataaaaaata attatgtaaa tgggtgaatg aaaataaaga ttgctaacag
     1921 agcaggaagg gcaccgtgtc taggggctac acatcagcca catgaaaatt acccacgaaa
     1981 ttaaggctgt ttgtaataat aaaagaatct tattttactg gaatgtttgt gggaagaat
//
