LOCUS       NM_001024307            2417 bp    mRNA    linear   ROD 30-JUL-2024
DEFINITION  Rattus norvegicus leucine-rich repeats and IQ motif containing 3
            (Lrriq3), mRNA.
ACCESSION   NM_001024307 XM_575067
VERSION     NM_001024307.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2417)
  AUTHORS   Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
            Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
            Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
            Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
            Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
            Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
            Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
            Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
            Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
            McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
            Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
            Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
            Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
            Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
            Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
            Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
            Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
            Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc Natl Acad Sci U S A 99 (26), 16899-16903 (2002)
   PUBMED   12477932
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC078994.1.
            
            On May 27, 2005 this sequence version replaced XM_575067.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC078994.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760389
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..2417
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="2"
                     /map="2q45"
     gene            1..2417
                     /gene="Lrriq3"
                     /gene_synonym="Lrrc44"
                     /note="leucine-rich repeats and IQ motif containing 3"
                     /db_xref="GeneID:499732"
                     /db_xref="RGD:1591943"
     exon            1..145
                     /gene="Lrriq3"
                     /gene_synonym="Lrrc44"
                     /inference="alignment:Splign:2.1.0"
     CDS             146..2047
                     /gene="Lrriq3"
                     /gene_synonym="Lrrc44"
                     /note="leucine-rich repeat-containing protein 44; leucine
                     rich repeat containing 44"
                     /codon_start=1
                     /product="leucine-rich repeat and IQ domain-containing
                     protein 3"
                     /protein_id="NP_001019478.1"
                     /db_xref="GeneID:499732"
                     /db_xref="RGD:1591943"
                     /translation="MFHGTITKELTSHEEWSHYNENIVEDQKDFVFVKYNGLHLKSME
                     NLQSCISLRVCIFSNNFVTDIQPLQGCKKLIKLDLHGNQIKTLPDRTFWNGLKNLKLL
                     YLHDNGFAKLKNICVLSGCVNLVGLTMFDCPVSLKKGYRHVLVNSIWPLKALDHHVIS
                     DEEIIQNWHLPERFKTFSQSLFFNICPAPIKGTTYEDEIKNIKHIISRINEILAHNSP
                     VLIIQRWIRGFIVRKHLSPYFTRKRHHDRMIRVLETKLICIGRNNEDKFLEDIFLIKP
                     ESNIKGKVAHWKQMRYSPDDFKYSTEYRKHISCLSYELKTKDIAGNSKQPRHHIQKGQ
                     NEMKSDSEDEEVDTKFRISAMKIPLCPSRSLKYRAMLKEIKWDYFPEYLQPLPATRQK
                     PQVKRETHEELKERRNFLASQRAGMDLHLFNDIDKYYSEQRQQEEEARKFAATAAAQV
                     AQERARLNTSENLRKKISMARKLMQKDNETIQKGLRHIWKERLNYLEKVRERKSMFLA
                     EKKLNAADQSLVLSLNNERSILLRGIIQVDKLKRDLSEMKAKHFDVIEKREKRKYKQN
                     LLTEMKKLRAEEIHKRHCEERFVIDTLIFQKGCERLEEAKAKVEFINTYYTSKSHKKY
                     HNKTMLNHI"
     exon            146..394
                     /gene="Lrriq3"
                     /gene_synonym="Lrrc44"
                     /inference="alignment:Splign:2.1.0"
     exon            395..718
                     /gene="Lrriq3"
                     /gene_synonym="Lrrc44"
                     /inference="alignment:Splign:2.1.0"
     exon            719..852
                     /gene="Lrriq3"
                     /gene_synonym="Lrrc44"
                     /inference="alignment:Splign:2.1.0"
     exon            853..1012
                     /gene="Lrriq3"
                     /gene_synonym="Lrrc44"
                     /inference="alignment:Splign:2.1.0"
     exon            1013..1142
                     /gene="Lrriq3"
                     /gene_synonym="Lrrc44"
                     /inference="alignment:Splign:2.1.0"
     exon            1143..1869
                     /gene="Lrriq3"
                     /gene_synonym="Lrrc44"
                     /inference="alignment:Splign:2.1.0"
     exon            1870..2388
                     /gene="Lrriq3"
                     /gene_synonym="Lrrc44"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 cgctctgtgg ggcagatggg cgggcaccta gcggtgccgg gctgcgcggg agcagtgggt
       61 tcccgcttta ccacgtctga cagcccgtct gcgccagagg agaccaaccc tcccacgata
      121 gtggatctac cacccagatg ctgagatgtt tcatggaaca atcacaaagg agcttaccag
      181 ccatgaggag tggagtcatt ataatgaaaa tatagtagaa gatcagaaag actttgtttt
      241 tgtgaagtat aatggccttc acctgaagtc catggagaac ctgcagtcct gcatctctct
      301 gagggtctgc atcttctcta acaactttgt cactgacatt cagccactgc agggctgcaa
      361 aaagctcatc aaacttgatc tccatggaaa ccagataaag actcttccag ataggacatt
      421 ttggaatgga ctcaagaacc tcaaactcct ctatctgcat gacaatgggt ttgccaaact
      481 gaagaacatc tgtgtattgt ctggttgtgt aaacctcgta ggcctgacca tgtttgactg
      541 cccagtgagc ctgaagaaag gctacaggca tgttcttgtc aatagtatct ggcctctaaa
      601 agctctggac caccacgtga tatccgatga agaaatcatt cagaactggc atcttccaga
      661 gagatttaaa acgttcagcc aaagtctatt ctttaacatt tgcccagcac cgataaaggg
      721 cacaacctat gaagatgaaa taaaaaatat caagcatata atttcaagga tcaatgaaat
      781 cctggctcat aactcaccgg tattgatcat ccagaggtgg atccgtggtt tcatagttag
      841 gaaacactta agcccctatt ttacacgtaa aaggcatcac gacagaatga ttagggtact
      901 tgaaacaaaa ttgatctgca taggtagaaa taacgaagac aaattcttgg aggatatctt
      961 ccttatcaag cctgaatcta atataaaagg gaaggtcgca cactggaaac aaatgagata
     1021 ttctcctgat gactttaaat attctactga gtacagaaaa cacatttcct gtctttcata
     1081 tgagttgaaa acaaaagata ttgctggaaa ttcaaaacaa ccaagacatc acattcagaa
     1141 aggtcagaac gagatgaaat ctgattctga ggatgaggaa gtggacacca agtttaggat
     1201 atctgcgatg aagatccctc tatgtccttc cagatcactc aagtaccggg caatgctgaa
     1261 ggagataaaa tgggactact tcccggagta tctccagcca ctccctgcca ctcgtcaaaa
     1321 gccacaagtt aaaagagaga ctcatgagga gctgaaggaa aggagaaatt ttctagcctc
     1381 acagagggct ggcatggatc tccacttgtt caatgatatt gataaatatt actcagagca
     1441 aaggcagcaa gaggaagaag caagaaaatt tgcagccaca gctgcagcac aagttgccca
     1501 ggaaagagct aggctcaaca ctagtgaaaa tttaaggaag aagatttcta tggcaagaaa
     1561 actaatgcaa aaggataatg agacaatcca gaaaggctta cggcacatct ggaaggagag
     1621 actcaactac ctggaaaagg ttagagagcg gaaatccatg tttctagctg aaaaaaaact
     1681 gaatgctgca gaccagtctt tagttctttc cctcaacaat gagaggtcca ttctgctcag
     1741 aggaatcatt caagttgaca aactgaagcg agacttgtct gaaatgaaag caaagcactt
     1801 cgatgttatt gagaaacggg aaaaacgaaa atacaagcag aatttgttga cggaaatgaa
     1861 gaagctaagg gcggaggaaa tccataaaag gcactgtgaa gagagatttg tcattgatac
     1921 gctcatcttt caaaaaggct gtgaaagact tgaggaggcg aaagcaaaag ttgaatttat
     1981 taacacatat tacacgtcca aatctcacaa aaaatatcat aataaaacaa tgctcaatca
     2041 catctgatga cagttgagtt gtgatcacta acggatcttg ggatcatact tggaagacat
     2101 gctccacaca aggcaggtct ggtgatgacc gtgctgcgga tcagagagaa gacactccct
     2161 agtgtttccg gtaccgagca taattcaaat cctattgact ttgcactccg aagggtcact
     2221 atgtatctat gtgcccaaga gggatcaaaa ctgtatgact tcatacaaaa ttcttccaaa
     2281 gactgcagat tttcataggc tctaacaatg acaagttgta aagctacttt caatattctc
     2341 tggtaatttt tatcttattg ccaaattcta ttaaaaatgt caaaatctaa aaaaaaaaaa
     2401 aaaaaaaaaa aaaaaaa
//
