LOCUS       XM_039080112            4302 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus leucine-rich repeats and IQ motif
            containing 1 (Lrriq1), transcript variant X1, mRNA.
ACCESSION   XM_039080112
VERSION     XM_039080112.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051342.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4302
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="7"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..4302
                     /gene="Lrriq1"
                     /note="leucine-rich repeats and IQ motif containing 1;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 1 EST, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 4 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:299759"
                     /db_xref="RGD:1564903"
     CDS             62..4132
                     /gene="Lrriq1"
                     /codon_start=1
                     /product="leucine-rich repeat and IQ domain-containing
                     protein 1 isoform X1"
                     /protein_id="XP_038936040.1"
                     /db_xref="GeneID:299759"
                     /db_xref="RGD:1564903"
                     /translation="MEDSDDSDAKLQEEIEAELDKISISSLENDEVENDSESETQSDD
                     SDTDVLELPESVLHYFSVIKNKSKTAEELILQDLEDTDVFSCSYGAVSDSHMHLRTGS
                     ASPESKANSEQLMKILSVIDKEEFMRSLAPSAKRVSVPEPITLDISMDEYVLPDEADL
                     SFGYFEVEERCRKSFEAWQDKQQELEVKDKAILEAQSDREKQSFQEEDEKRQCWIRQF
                     EVEKKKLENLHKQNQDKMNDELHKEEKIWKEKYRQHEERIRNLHLQMEEERTRLRELR
                     EKEKARLFKLQHDAAVKIQANYRAWVTYRKYSPIIREQIEKKKRKAQELKEKEAKIRQ
                     KEEERRRRIEEEQRIKEERKKKMLEERRRREKEYEEKKSILRQEREEQKSKEKRLREH
                     AHSPLIITCALKKGECHGKQQAIVQMSKSKGSIDKESVGSDSKKQEDTCLVHQLNKRE
                     NMHKQIALKESTGIKLKPSQDILAELKLNEKIESLPKLKMNENFSNNQCSGSEQSADQ
                     EINSENRDLKSDLENSDLTENVNEQCPGQELNSETQMEGWVEHAPKENVGQETQKLFG
                     FREEMSEEDSNEAPEIIEENHERMTEEIEIKEMTEQDGSSCEENNSSPISIQKNLPPL
                     IPDNPEPVERSVTLAEDEETDLKSERIEEIPEGVLACDASTIKSNASVLTEGKADLQD
                     SFSGKLAPSEEAGSHSACYLLVTDEGEDSPKSEIKETLEEGKQTESEGVGVLACSSSQ
                     ITVLSSIEEKRLAWVRSFKPWTEIFEQNQLKKIVKKRRLVKCSPNTMPALDPSAILQL
                     GPWKTLQQVTAITFQDLPSCSLSILAECSNLQLLSLQRCGLTSLQGLSHCTNLKYIDA
                     QENHIETISCENLENLSVVLLNKNLLTSIHGFDGCTNIQILELSYNKITRISGLESLK
                     YLQQLIVDHNQLISTKGLCEVPTIVYLDCSHNHLTDVDGIGNCGLLQIVKLQGNYLRE
                     PPSLRNHVLLRELHLDDNSISSVEGLSSCWLPLLQILSISQNSLATIVPLFHFVSLEK
                     LDVSNNCLSDLTNVMCWFNACYSLGELCLIGNPVLQEVNWRHSILQALPALRVLNGDM
                     LNSSSNVHIEEYYHQDLRYFLALCQYQLQEFNLLFEKSITQRGDILNMRAADRLSQYY
                     KDLMRLSNECRLAHEQWDVNITKRSAVETKKDHPAFPNSDSTLHNRTFHPQANDCKAH
                     SPAISTILLDTASKPSTSNCEELKGRDQEKLMEQKSKHSSISSLSTMKASIIEMKMAD
                     SPMSTHHSDEKCEPSKAAMIIQAQWRSYIARRQIDYSEKPCPTTASEPLCNSFINDQM
                     TSNEEGRKPIMNIQEQREKAALCIQFGRALFYERNW"
ORIGIN      
        1 gctacgattt gttgagcagc tgtgggcgct gtctcccagg aagtacggat ctcggggagt
       61 tatggaggac agtgacgaca gcgatgcaaa gctccaagaa gaaatagaag ctgaattgga
      121 taaaatcagc atttcttcct tggaaaatga tgaggttgaa aacgattcag aatcagaaac
      181 tcagagtgat gatagtgaca ctgatgtact tgaattgcca gagtcagttc ttcattattt
      241 cagcgtcata aagaacaaga gtaaaactgc tgaagagctc attcttcagg acttggaaga
      301 tactgatgtc ttcagttgta gttatggcgc agtgtctgac agtcatatgc atttgagaac
      361 tggatcagca tcacctgaat ctaaagcaaa ttctgagcaa ttaatgaaga tattatctgt
      421 aatagacaag gaagaattta tgagaagtct agctccttct gccaagcgtg tatctgttcc
      481 tgagcctatt actcttgaca tatccatgga tgaatatgtt ttaccagatg aggctgattt
      541 gagttttgga tactttgaag tagaagaacg atgtagaaaa tcttttgaag cttggcagga
      601 caaacaacag gaactagaag taaaagataa agcaattctg gaagcccaga gtgacaggga
      661 aaaacagagc tttcaagagg aagatgaaaa gagacaatgc tggataagac agtttgaagt
      721 tgaaaagaaa aaattagaga atcttcataa gcaaaaccaa gacaagatga atgatgaact
      781 ccataaagaa gagaaaatat ggaaagaaaa atacagacag catgaggaac gtatcagaaa
      841 cttgcattta caaatggagg aggagagaac aagattaagg gagctacgag aaaaagaaaa
      901 agcacgttta ttcaaactgc agcatgatgc agctgtaaaa attcaagcca attatagagc
      961 atgggtaact taccggaagt atagcccaat cataagagag caaatcgaaa agaaaaagag
     1021 gaaagcacag gagttgaaag agaaggaggc aaagatacga cagaaggagg aagaaaggag
     1081 gaggagaatt gaagaggaac agagaataaa ggaggagagg aagaagaaga tgctagagga
     1141 gaggaggagg cgggaaaagg aatacgaaga gaaaaagagc atcctgagac aagagagaga
     1201 agagcaaaaa agcaaggaaa agagactgag ggaacatgcc cactcaccgc tgatcatcac
     1261 ctgtgcttta aagaaaggag aatgtcatgg caagcagcaa gctattgtac agatgtcaaa
     1321 gagtaagggt agtatagaca aagagtcggt gggcagtgac tcaaagaagc aagaagatac
     1381 ttgcctagtt caccaattaa acaagagaga aaatatgcat aaacagattg cattgaagga
     1441 atcgacagga attaaattaa aaccaagcca ggacattttg gcagaattaa aactgaacga
     1501 gaaaattgaa agtttaccaa aattaaaaat gaatgaaaac ttttcaaaca accaatgttc
     1561 aggttcagaa caatctgctg accaagaaat taactctgaa aatagagacc taaaaagtga
     1621 cttggaaaac tctgacctaa cggaaaatgt gaacgaacag tgcccagggc aagaactaaa
     1681 ctctgaaact caaatggagg gatgggtaga gcatgccccg aaggagaatg tgggacaaga
     1741 gacccaaaaa ctctttggat tcagggaaga aatgagtgaa gaggacagta atgaagcacc
     1801 ggaaatcatc gaggagaatc atgagagaat gactgaagag atagaaatca aagagatgac
     1861 agagcaagat gggtcatcat gtgaggagaa taatagttca cctatttcca tacagaaaaa
     1921 cctaccacca ctgataccag acaatcctga acctgtagaa agaagtgtaa cactagcaga
     1981 agatgaagag actgatttaa aatcagaaag aattgaggaa atcccagaag gtgtgctggc
     2041 ttgtgatgct tcaaccatta aatcaaatgc ttctgtgctc acagaaggca aggcagacct
     2101 gcaggattct ttctcaggca aacttgctcc cagtgaagaa gcgggtagtc acagtgcttg
     2161 ttacctcttg gtcactgacg aaggggaaga ctctcctaaa tctgagatta aagaaactct
     2221 ggaagaaggg aaacaaacag agtctgaagg tgttggtgtc ctggcttgct cttcttcaca
     2281 gataacagta ttatcttcaa ttgaggaaaa gagactagct tgggtaagat cgtttaaacc
     2341 ttggaccgaa atctttgagc aaaatcaact taagaaaatc gttaaaaaaa ggagacttgt
     2401 gaagtgctca ccaaatacaa tgcctgcttt ggatccttca gccattctcc agcttggccc
     2461 ttggaaaact ctacagcagg ttactgccat tacatttcag gatttgccca gctgtagtct
     2521 ctctatactt gcagagtgct ccaatcttca gctcctgtct ctccaacgct gtggattaac
     2581 ttccttgcag ggcctgagcc actgcacaaa ccttaagtat atcgatgcac aggaaaacca
     2641 cattgagact atcagttgtg aaaatttgga aaatctctct gttgttcttc ttaataaaaa
     2701 cctgctgact tctattcatg gtttcgatgg atgcaccaat atccaaatcc tggaactttc
     2761 atataataaa atcactcgaa tcagtggttt agaatctttg aaatatcttc aacaactgat
     2821 tgtggaccac aatcagctaa ttagcactaa aggtctttgt gaagtaccca ccatcgtgta
     2881 cctggactgc tcacataacc atcttactga tgttgatggc attggaaatt gtggattgct
     2941 ccaaatagta aagttgcagg gaaattacct aagagagcct ccatccttaa gaaatcatgt
     3001 tctcctcaga gagctgcatt tggacgacaa cagcatctca agtgtggaag gactttcttc
     3061 ttgttggttg cctttactac aaattctaag tatctcacaa aacagtttag caacaattgt
     3121 accacttttt cattttgtgt ctttggaaaa gctagatgtc agcaacaatt gtctttctga
     3181 tctcacaaat gtcatgtgtt ggttcaatgc atgctactct ctcggtgagc tttgtctcat
     3241 tggaaaccca gtactacagg aagtaaactg gagacattct atacttcaag cattacctgc
     3301 tctgagagtc ctcaatggtg acatgctgaa ttcttcctcc aatgtccata ttgaagaata
     3361 ctatcatcaa gacctaagat atttcttggc actttgtcag taccaacttc aagagttcaa
     3421 cttattattt gaaaagtcta tcacacagag gggggacatt ctcaatatgc gtgctgctga
     3481 cagactctca cagtactata aagacttgat gagactcagt aatgaatgca gacttgcaca
     3541 tgaacaatgg gatgtcaata ttaccaagag gtctgcagta gaaaccaaga aagaccatcc
     3601 agcttttcca aacagtgaca gcacacttca caacaggacc tttcatcctc aggctaacga
     3661 ttgtaaggca cattcaccag caatttctac aatcctgttg gacactgcct ctaaaccttc
     3721 cacatcaaac tgtgaagaac tgaaaggaag agatcaggaa aagcttatgg agcagaagag
     3781 taaacacagc agcatcagta gtctctccac catgaaagcc tccatcatag aaatgaagat
     3841 ggcagattct ccaatgagta ctcatcacag tgatgaaaag tgtgaaccaa gcaaggcagc
     3901 catgataatc caagcgcaat ggcgtagtta cattgcacga agacagattg attactctga
     3961 aaaaccttgt ccaaccacag cgtcagaacc cttgtgcaat tccttcatta atgaccagat
     4021 gacttccaat gaagaaggaa gaaaacctat tatgaatatc caagaacaga gggagaaagc
     4081 tgctctttgc attcagtttg gaagggcttt attttacgaa agaaactggt gaccgccata
     4141 gaggctatca aggatgaaga atctggagaa gaatatgaag aaatagattt agaggatttt
     4201 gaatttgatg aggatgcctt ggagaaagac tggccagcct tagattccac cagcttccct
     4261 tcacaaacac tgcctctctc caagcagctg ccctggccaa ag
//
