LOCUS       XM_039081281            3140 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus LRR binding FLII interacting protein 2
            (Lrrfip2), transcript variant X42, mRNA.
ACCESSION   XM_039081281
VERSION     XM_039081281.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051343.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039081281.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3140
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="8"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..3140
                     /gene="Lrrfip2"
                     /note="LRR binding FLII interacting protein 2; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 24 ESTs, 2 long SRA reads, 1 Protein, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 31 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:301035"
                     /db_xref="RGD:1306234"
     CDS             430..1899
                     /gene="Lrrfip2"
                     /codon_start=1
                     /product="leucine-rich repeat flightless-interacting
                     protein 2 isoform X39"
                     /protein_id="XP_038937209.1"
                     /db_xref="GeneID:301035"
                     /db_xref="RGD:1306234"
                     /translation="MGTPGSGRKRTPVKDRFSAEDEALSNIAREAEARLAAKRAARAE
                     ARDIRMRELERQQRELDEKSDKQYAENYTRPSSRNSASATTPLSGNSSRRGSGDTSSL
                     IDPDTSLSELRDIYDLKDQIHDVEGRYMQGLKELKESLSEVEEKYKKAMVSNAQLDNE
                     KNNLIYQVDTLKDVIEEQEEQMAEFYRENEEKSKELERQKHMCSVLQHKMDELKEGLR
                     QRDELIEENQRLQQKVDTMTKEVFDLQETLLWKDKTIGALEKQKEHIACLRNERDVLR
                     EELADLQQTVKTAEKHGLVIIPESTPNGDVNHEPVVGAITAVSQEAAQVLESAGEGPL
                     DVRLRKLAEEKDELLSQIRKLKLQLEEERQKCSRNDGMSGDLAGLQNGSDLQFIEMQR
                     DANRQISEYKFKLSKAEQDIATLEQSISRLEGQVLRYKTAAENAEKIEDELKAEKRKL
                     QRELRTAQDKIEEMEMTNSHLAKRLEKMKANRTALLAQQ"
ORIGIN      
        1 gggtgagcgg gtcgccggcc ggtggccccg cccctctgcc ccgccaccgc cgcagctgca
       61 gccgccgctc gggctgcggc tcatcccggg ttgcgttcgc cgtgtcggcc gcggcgcgaa
      121 gggcgccctg agtgtgacta cacggtcgtc cgcagcgcga ggagcccttc ttttgcctcc
      181 ctgcggcccg cggggtggac ggtgcgggga cagagtgtgg ccgccgctcc cctctcccgg
      241 ctccggagcg gccgatctgg cccttccggg cggcgccgca gcctcatccc gcgccacacg
      301 cagatgtggg aagacaaatg aagggattta gaaaccaaat aaatgccagt ggaaaggaga
      361 gctaccatca ctaagtgctg aacacgagta aactcatttt cagagttaaa aaattattaa
      421 aaaaacaaga tggggactcc tggttctgga aggaaaagaa caccagtgaa agatcgattt
      481 tctgcagaag atgaagcttt gagtaacatc gccagagagg ctgaagcaag gctagcagca
      541 aagcgggccg ccagggcaga agcaagagac atccgcatga gggaactgga acgacagcag
      601 agagagttgg atgaaaaatc tgacaaacag tatgctgaaa attacacaag accctcatct
      661 cgaaattctg cgtcagcaac aacacctcta agcggaaact catccagacg gggtagtggg
      721 gacaccagta gtttaataga cccagacacc tcgttaagtg aactgcggga catctatgac
      781 ctgaaggacc agatacatga tgtagaaggg agatacatgc aggggcttaa ggaactgaag
      841 gagtctttgt ctgaagtaga agagaagtac aagaaagcca tggtgtccaa tgcacaacta
      901 gacaacgaga agaacaatct gatctaccag gtggacaccc tcaaggacgt catcgaggag
      961 caggaggagc agatggcaga gttctataga gaaaacgaag agaaatcaaa ggagttggaa
     1021 cggcagaaac atatgtgcag tgtgctgcag cataagatgg atgaactgaa agagggcctt
     1081 cggcagaggg acgagctcat cgaggagaat cagcgcctcc agcagaaagt agacaccatg
     1141 acaaaagagg tgtttgacct tcaggagacc ctgctctgga aagataaaac aattggggcc
     1201 ctagagaaac agaaagaaca cattgcctgc ctcaggaatg agcgagatgt gctcagagag
     1261 gagctggctg acctgcagca gacggtgaag acagcagaga agcacggctt agttataatc
     1321 ccagagagta ctcccaatgg cgacgtcaat catgagcctg tggttggagc cattactgct
     1381 gtgtctcagg aagctgctca ggtcttggag tcagcaggag aagggccact agatgtgagg
     1441 ctgcggaagc ttgctgagga aaaggacgag ctcctgtcac agattagaaa actgaagctc
     1501 cagttagagg aagaacggca gaagtgttcc aggaatgatg gcatgtccgg ggacctggca
     1561 gggctgcaga acggctccga cttgcagttc atcgagatgc agagagacgc caatagacaa
     1621 attagtgaat acaaattcaa gctttcgaaa gcagaacaag acatagctac cttggaacaa
     1681 agtatcagcc ggcttgaggg gcaggtgctg aggtacaaga ctgccgctga gaacgctgag
     1741 aagattgaag acgagctgaa agcagagaag aggaagctac agcgagagct acggacagca
     1801 caggacaaga tcgaggagat ggagatgacc aacagccacc tggcaaagcg gctagagaag
     1861 atgaaggcca acaggacagc ccttctagcc cagcagtagg aggcagcccc tccacctggg
     1921 tgctgctctg agggctttgc tgggagatac tgactcttgt acattgacac agccccttcc
     1981 agtactgttt tgagtcttgt cattaaacag ccacctttgt attttataat ttatgagaat
     2041 gaagcaggtt taatcgttat ggatttggat tttgtttgta gttcacttct acagtgagag
     2101 ctagtctgtg ctgtttttat tttcaacatt ctagaatcac gttttctcgc catcttcttc
     2161 cagctgcctc cctgactagg cacttgggcg gccttgccgt gggttctgga ggatggccat
     2221 ctgagcgctg agacacttgg agacctcaaa agcacaagtg ccttctccac agtgtgatac
     2281 aggcgtcaga gagcaagcgg ccaagattcc cactcttctt accagagcaa ttacagttca
     2341 gtgaggatgt gttcagcagt ggggagtttg tgtttcactc aaatttatgt ttggaggaaa
     2401 aaagcctttt tttgtaagat atttaaattt atataaaaat gttagaaaac aatatgggga
     2461 gtgtatatta aactttattg cacgggatag agcaagtcca agcctgtact ccaaaaagta
     2521 ggtagggtcc tcagtctcca cactgtgctg ttccgtgtaa ttttatctgc tgcttatttg
     2581 tgaaatgaaa cctcagacaa gctcaaggga cgaggtaggg acagtgcagg caggtagggg
     2641 atctgcctga atctacctat aaaacatacc tttctgccac ccaggattgg ctgcgggcag
     2701 tcattaaaga agcctttagg acaagtcatg gcaaccatgt acagtcctgt cttgctcttc
     2761 ttttctcaag atgagagaat ctggagtaca gaacttactt ctagtttttt aagggaaagg
     2821 atctatgtag cccaagctgg tcttcacctc gctgggcctc ttgagctctg gggttccaga
     2881 taggcactcg catgcctggt cccagtagaa aatgctcaag aacttcatct ttaaaaagcc
     2941 cagttcaaga tgcttgccct actgtaacca cgttataggg tttgtgattc tcttttgtca
     3001 gaatcaaggt ggtgccatgg gaatgattgc tgtagctcag attgtttaca gagaaactat
     3061 attgaggaaa atctaatgaa tcaaagcctc ttaataagtc tagccttgga actagataat
     3121 aaaattacct caaaagtaaa
//
