LOCUS       XM_039081279            3184 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus LRR binding FLII interacting protein 2
            (Lrrfip2), transcript variant X40, mRNA.
ACCESSION   XM_039081279
VERSION     XM_039081279.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051343.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3184
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="8"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..3184
                     /gene="Lrrfip2"
                     /note="LRR binding FLII interacting protein 2; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 22 ESTs, 2 long SRA reads, 2 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 2 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:301035"
                     /db_xref="RGD:1306234"
     CDS             432..1943
                     /gene="Lrrfip2"
                     /codon_start=1
                     /product="leucine-rich repeat flightless-interacting
                     protein 2 isoform X37"
                     /protein_id="XP_038937207.1"
                     /db_xref="GeneID:301035"
                     /db_xref="RGD:1306234"
                     /translation="MGTPGSGRKRTPVKDRFSAEDEALSNIAREAEARLAAKRAARAE
                     ARDIRMRELERQQREEDSERAQYSHRSGYRSGYRRSYLGVEDTLSLRSLGSHRLDEKS
                     DKQYAENYTRPSSRNSASATTPLSGNSSRRGSGDTSSLIDPDTSLSELRESLSEVEEK
                     YKKAMVSNAQLDNEKNNLIYQVDTLKDVIEEQEEQMAEFYRENEEKSKELERQKHMCS
                     VLQHKMDELKEGLRQRDELIEENQRLQQKVDTMTKEVFDLQETLLWKDKTIGALEKQK
                     EHIACLRNERDVLREELADLQQTVKTAEKHGLVIIPESTPNGDVNHEPVVGAITAVSQ
                     EAAQVLESAGEGPLDVRLRKLAEEKDELLSQIRKLKLQLEEERQKCSRNDGMSGDLAG
                     LQNGSDLQFIEMQRDANRQISEYKFKLSKAEQDIATLEQSISRLEGQVLRYKTAAENA
                     EKIEDELKAEKRKLQRELRTAQDKIEEMEMTNSHLAKRLEKMKANRTALLAQQ"
ORIGIN      
        1 ccgggtgagc gggtcgccgg ccggtggccc cgcccctctg ccccgccacc gccgcagctg
       61 cagccgccgc tcgggctgcg gctcatcccg ggttgcgttc gccgtgtcgg ccgcggcgcg
      121 aagggcgccc tgagtgtgac tacacggtcg tccgcagcgc gaggagccct tcttttgcct
      181 ccctgcggcc cgcggggtgg acggtgcggg gacagagtgt ggccgccgct cccctctccc
      241 ggctccggag cggccgatct ggcccttccg ggcggcgccg cagcctcatc ccgcgccaca
      301 cgcagatgtg ggaagacaaa tgaagggatt tagaaaccaa ataaatgcca gtggaaagga
      361 gagctaccat cactaagtgc tgaacacgag taaactcatt ttcagagtta aaaaattatt
      421 aaaaaaacaa gatggggact cctggttctg gaaggaaaag aacaccagtg aaagatcgat
      481 tttctgcaga agatgaagct ttgagtaaca tcgccagaga ggctgaagca aggctagcag
      541 caaagcgggc cgccagggca gaagcaagag acatccgcat gagggaactg gaacgacagc
      601 agagagagga agattcagaa agggcccagt attctcaccg atctggttac cgatctggtt
      661 accgccgttc ttacctggga gttgaggata cattgtctct tcgaagcctt ggcagtcaca
      721 ggttggatga aaaatctgac aaacagtatg ctgaaaatta cacaagaccc tcatctcgaa
      781 attctgcgtc agcaacaaca cctctaagcg gaaactcatc cagacggggt agtggggaca
      841 ccagtagttt aatagaccca gacacctcgt taagtgaact gcgggagtct ttgtctgaag
      901 tagaagagaa gtacaagaaa gccatggtgt ccaatgcaca actagacaac gagaagaaca
      961 atctgatcta ccaggtggac accctcaagg acgtcatcga ggagcaggag gagcagatgg
     1021 cagagttcta tagagaaaac gaagagaaat caaaggagtt ggaacggcag aaacatatgt
     1081 gcagtgtgct gcagcataag atggatgaac tgaaagaggg ccttcggcag agggacgagc
     1141 tcatcgagga gaatcagcgc ctccagcaga aagtagacac catgacaaaa gaggtgtttg
     1201 accttcagga gaccctgctc tggaaagata aaacaattgg ggccctagag aaacagaaag
     1261 aacacattgc ctgcctcagg aatgagcgag atgtgctcag agaggagctg gctgacctgc
     1321 agcagacggt gaagacagca gagaagcacg gcttagttat aatcccagag agtactccca
     1381 atggcgacgt caatcatgag cctgtggttg gagccattac tgctgtgtct caggaagctg
     1441 ctcaggtctt ggagtcagca ggagaagggc cactagatgt gaggctgcgg aagcttgctg
     1501 aggaaaagga cgagctcctg tcacagatta gaaaactgaa gctccagtta gaggaagaac
     1561 ggcagaagtg ttccaggaat gatggcatgt ccggggacct ggcagggctg cagaacggct
     1621 ccgacttgca gttcatcgag atgcagagag acgccaatag acaaattagt gaatacaaat
     1681 tcaagctttc gaaagcagaa caagacatag ctaccttgga acaaagtatc agccggcttg
     1741 aggggcaggt gctgaggtac aagactgccg ctgagaacgc tgagaagatt gaagacgagc
     1801 tgaaagcaga gaagaggaag ctacagcgag agctacggac agcacaggac aagatcgagg
     1861 agatggagat gaccaacagc cacctggcaa agcggctaga gaagatgaag gccaacagga
     1921 cagcccttct agcccagcag taggaggcag cccctccacc tgggtgctgc tctgagggct
     1981 ttgctgggag atactgactc ttgtacattg acacagcccc ttccagtact gttttgagtc
     2041 ttgtcattaa acagccacct ttgtatttta taatttatga gaatgaagca ggtttaatcg
     2101 ttatggattt ggattttgtt tgtagttcac ttctacagtg agagctagtc tgtgctgttt
     2161 ttattttcaa cattctagaa tcacgttttc tcgccatctt cttccagctg cctccctgac
     2221 taggcacttg ggcggccttg ccgtgggttc tggaggatgg ccatctgagc gctgagacac
     2281 ttggagacct caaaagcaca agtgccttct ccacagtgtg atacaggcgt cagagagcaa
     2341 gcggccaaga ttcccactct tcttaccaga gcaattacag ttcagtgagg atgtgttcag
     2401 cagtggggag tttgtgtttc actcaaattt atgtttggag gaaaaaagcc tttttttgta
     2461 agatatttaa atttatataa aaatgttaga aaacaatatg gggagtgtat attaaacttt
     2521 attgcacggg atagagcaag tccaagcctg tactccaaaa agtaggtagg gtcctcagtc
     2581 tccacactgt gctgttccgt gtaattttat ctgctgctta tttgtgaaat gaaacctcag
     2641 acaagctcaa gggacgaggt agggacagtg caggcaggta ggggatctgc ctgaatctac
     2701 ctataaaaca tacctttctg ccacccagga ttggctgcgg gcagtcatta aagaagcctt
     2761 taggacaagt catggcaacc atgtacagtc ctgtcttgct cttcttttct caagatgaga
     2821 gaatctggag tacagaactt acttctagtt ttttaaggga aaggatctat gtagcccaag
     2881 ctggtcttca cctcgctggg cctcttgagc tctggggttc cagataggca ctcgcatgcc
     2941 tggtcccagt agaaaatgct caagaacttc atctttaaaa agcccagttc aagatgcttg
     3001 ccctactgta accacgttat agggtttgtg attctctttt gtcagaatca aggtggtgcc
     3061 atgggaatga ttgctgtagc tcagattgtt tacagagaaa ctatattgag gaaaatctaa
     3121 tgaatcaaag cctcttaata agtctagcct tggaactaga taataaaatt acctcaaaag
     3181 taaa
//
