LOCUS       NM_001191613            3485 bp    mRNA    linear   ROD 24-JUN-2024
DEFINITION  Rattus norvegicus leucine rich repeat containing 9 (Lrrc9), mRNA.
ACCESSION   NM_001191613 XM_216733
VERSION     NM_001191613.1
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from
            JAXUCZ010000006.1.
            
            On Jul 17, 2010 this sequence version replaced XM_216733.4.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643293.35677.1,
                                           SRR26643293.35673.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760389
                                           [ECO:0000348]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-48                JAXUCZ010000006.1  96761279-96761326
            49-267              JAXUCZ010000006.1  96761595-96761813
            268-408             JAXUCZ010000006.1  96762621-96762761
            409-472             JAXUCZ010000006.1  96763554-96763617
            473-543             JAXUCZ010000006.1  96764145-96764215
            544-726             JAXUCZ010000006.1  96766264-96766446
            727-882             JAXUCZ010000006.1  96768231-96768386
            883-1064            JAXUCZ010000006.1  96771431-96771612
            1065-1196           JAXUCZ010000006.1  96772492-96772623
            1197-1373           JAXUCZ010000006.1  96774898-96775074
            1374-1491           JAXUCZ010000006.1  96775403-96775520
            1492-1624           JAXUCZ010000006.1  96776519-96776651
            1625-1747           JAXUCZ010000006.1  96780041-96780163
            1748-1851           JAXUCZ010000006.1  96781122-96781225
            1852-2064           JAXUCZ010000006.1  96784300-96784512
            2065-2184           JAXUCZ010000006.1  96789530-96789649
            2185-2376           JAXUCZ010000006.1  96790613-96790804
            2377-2502           JAXUCZ010000006.1  96792085-96792210
            2503-2637           JAXUCZ010000006.1  96793862-96793996
            2638-2815           JAXUCZ010000006.1  96795356-96795533
            2816-3036           JAXUCZ010000006.1  96797040-96797260
            3037-3159           JAXUCZ010000006.1  96798424-96798546
            3160-3290           JAXUCZ010000006.1  96819139-96819269
            3291-3485           JAXUCZ010000006.1  96820205-96820399
FEATURES             Location/Qualifiers
     source          1..3485
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="6"
                     /map="6q24"
     gene            1..3485
                     /gene="Lrrc9"
                     /gene_synonym="RGD1565716"
                     /note="leucine rich repeat containing 9"
                     /db_xref="GeneID:299129"
                     /db_xref="RGD:1565716"
     CDS             1..3468
                     /gene="Lrrc9"
                     /gene_synonym="RGD1565716"
                     /codon_start=1
                     /product="leucine-rich repeat-containing protein 9"
                     /protein_id="NP_001178542.1"
                     /db_xref="GeneID:299129"
                     /db_xref="RGD:1565716"
                     /translation="MIESEHFNRGEIIKELCLCNGLSYEMVGQEGSDTSKLEMFFSGY
                     PRIVGLSLFHNLSSLTIVAQDIKEISGLETCLRLKELWIAECCIEKIEGLHGCRNLEK
                     LYLYYNKISKIENLEKLIKLEVLWLNHNTIRNIEGLQTLKNLKDLNLAGNLISSIGRC
                     LDPNEQLEKLNLSGNQITSFKDLTNLTKLPRLKDLSLNDPQYKSNPVCQLCNYSTHVL
                     YHLPSLQRLDTFDVSAKQIKELADSTAMKKIMYYNMRIKTVQRHLNEELEKLNDRKCK
                     LQKLPEERIKLFNFAKKTLERELAELKISGKGQSDTAPEAEKARNSETLTQESVLQQK
                     ILTKLNALDDRVMFWNKKLHEIEAIYRTEVKQKKKSHGLLTPFLLTELETVGNIHFEE
                     GTRADEWFNSCYELILSRFCTWDFRAYGITGVKVKRVIKVNNRILRLRFEEKFQKCLD
                     LEDIQDSESYRKMLECLFYVFDPEVTVKKKHLLQILERGFKDSDTSKPPLRKEAVTLV
                     NSLSMCECPRIEFLQQKYKEEKKSPSESDLYRHGTILIAKVFLGQSIQARDQEPISKA
                     NYPMVNSVFVPQRHMLRQRTCDCGYRQYKWFVFDHDLVLPEYIVEFEYTTVVKVHSLF
                     STLNNVILEEGKKYSEGLVFSQDLKFDDEVLKMEPRIKPRPKLISLDEKTIISLARTN
                     IYSHIVNLNLHGNSLSKLRDLSKLTGLRKLNISFNEFTCLDDVYHLYNLEYLDASHNH
                     VITLEGFRGLMKLKHLDLSWNQLKKTGEEINVLCKHTTSLLTLDIQHNPWQKPATLRL
                     SVIGRLKTLTHLDGLLISEEETRAALKFISGTKITQLTLLQHSSSKEERPRMLSIWPS
                     AKILTQISKLGPHFHLTGNWYLKITALNLDGQHLFEITNLEKLENLKWASFSNNNLSK
                     MEGLESCVNLEELTLDGNCISKIEGITRLTKLSRLSMNNNLLTGLEKHTFDNMLHLHS
                     LSLENNRITSLSALQKTFTLIELYISNNYIAVNQEIYNLKGLCNLVILDMYGNIIIWN
                     QENYRLFVIFHLSELKALDGMSIEPSETENAKDLFGGRLTSDMIAERQGHSNFVQMQE
                     LNWTSSSIRTVDLIPVDHFRNVSNVNLQNNNLTSFSGLIYLPNVKARGCRAIFALKDF
                     STSFNLHLH"
     exon            1..48
                     /gene="Lrrc9"
                     /gene_synonym="RGD1565716"
                     /inference="alignment:Splign:2.1.0"
     exon            49..267
                     /gene="Lrrc9"
                     /gene_synonym="RGD1565716"
                     /inference="alignment:Splign:2.1.0"
     exon            268..408
                     /gene="Lrrc9"
                     /gene_synonym="RGD1565716"
                     /inference="alignment:Splign:2.1.0"
     exon            409..472
                     /gene="Lrrc9"
                     /gene_synonym="RGD1565716"
                     /inference="alignment:Splign:2.1.0"
     exon            473..543
                     /gene="Lrrc9"
                     /gene_synonym="RGD1565716"
                     /inference="alignment:Splign:2.1.0"
     exon            544..726
                     /gene="Lrrc9"
                     /gene_synonym="RGD1565716"
                     /inference="alignment:Splign:2.1.0"
     exon            727..882
                     /gene="Lrrc9"
                     /gene_synonym="RGD1565716"
                     /inference="alignment:Splign:2.1.0"
     exon            883..1064
                     /gene="Lrrc9"
                     /gene_synonym="RGD1565716"
                     /inference="alignment:Splign:2.1.0"
     exon            1065..1196
                     /gene="Lrrc9"
                     /gene_synonym="RGD1565716"
                     /inference="alignment:Splign:2.1.0"
     exon            1197..1373
                     /gene="Lrrc9"
                     /gene_synonym="RGD1565716"
                     /inference="alignment:Splign:2.1.0"
     exon            1374..1491
                     /gene="Lrrc9"
                     /gene_synonym="RGD1565716"
                     /inference="alignment:Splign:2.1.0"
     exon            1492..1624
                     /gene="Lrrc9"
                     /gene_synonym="RGD1565716"
                     /inference="alignment:Splign:2.1.0"
     exon            1625..1747
                     /gene="Lrrc9"
                     /gene_synonym="RGD1565716"
                     /inference="alignment:Splign:2.1.0"
     exon            1748..1851
                     /gene="Lrrc9"
                     /gene_synonym="RGD1565716"
                     /inference="alignment:Splign:2.1.0"
     exon            1852..2064
                     /gene="Lrrc9"
                     /gene_synonym="RGD1565716"
                     /inference="alignment:Splign:2.1.0"
     exon            2065..2184
                     /gene="Lrrc9"
                     /gene_synonym="RGD1565716"
                     /inference="alignment:Splign:2.1.0"
     exon            2185..2376
                     /gene="Lrrc9"
                     /gene_synonym="RGD1565716"
                     /inference="alignment:Splign:2.1.0"
     exon            2377..2502
                     /gene="Lrrc9"
                     /gene_synonym="RGD1565716"
                     /inference="alignment:Splign:2.1.0"
     exon            2503..2637
                     /gene="Lrrc9"
                     /gene_synonym="RGD1565716"
                     /inference="alignment:Splign:2.1.0"
     exon            2638..2815
                     /gene="Lrrc9"
                     /gene_synonym="RGD1565716"
                     /inference="alignment:Splign:2.1.0"
     exon            2816..3036
                     /gene="Lrrc9"
                     /gene_synonym="RGD1565716"
                     /inference="alignment:Splign:2.1.0"
     exon            3037..3159
                     /gene="Lrrc9"
                     /gene_synonym="RGD1565716"
                     /inference="alignment:Splign:2.1.0"
     exon            3160..3290
                     /gene="Lrrc9"
                     /gene_synonym="RGD1565716"
                     /inference="alignment:Splign:2.1.0"
     exon            3291..3485
                     /gene="Lrrc9"
                     /gene_synonym="RGD1565716"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 atgattgaaa gtgaacactt taatcgaggt gaaatcatta aagaactgtg tttgtgcaat
       61 ggtttatctt atgagatggt tggacaagaa ggatcagata cttcaaaact ggagatgttc
      121 ttttcagggt atccccgaat agttggatta tcactgtttc ataatttatc aagtcttaca
      181 attgttgctc aagatataaa ggaaatttca gggctagaga cttgcttacg gcttaaggaa
      241 ctttggattg ctgagtgctg catagagaaa attgaaggcc ttcacggatg tagaaatttg
      301 gaaaaattat atttatatta caataaaatt tccaaaatag aaaatttaga gaagttaata
      361 aaattggaag ttctgtggct gaaccacaac acgataagaa atattgaggg cttgcagact
      421 ttgaagaatc taaaagacct caaccttgcg gggaacctaa taagcagcat tggtcgatgt
      481 ctcgatccca atgaacaact ggaaaaacta aacctttctg gaaatcaaat tacttctttc
      541 aaggacctta ctaacttgac caagctccct cgcttaaagg atttatctct gaatgaccct
      601 cagtataaat caaatccagt gtgtcagctg tgtaactact ccacccacgt gttgtatcac
      661 ctgccttctc ttcaacgact tgacacgttt gacgtatcag caaagcaaat caaggagctg
      721 gcagattcaa cagcaatgaa aaaaataatg tattataaca tgagaataaa aactgttcag
      781 agacatctga atgaagaact tgaaaaactg aatgacagga aatgcaagtt acagaagcta
      841 ccggaagaac ggataaaatt attcaacttt gcaaagaaaa cattagaacg ggaactggct
      901 gaactcaaga tctctggcaa agggcagagt gatactgcac cagaggccga gaaagcccgg
      961 aatagtgaga ctctcacaca ggaatcggtt ctgcagcaga agatactgac caagctgaat
     1021 gccctggacg acagagtcat gttctggaac aagaagctac atgaaattga agcaatttat
     1081 cgtactgaag taaaacagaa gaagaagagc catggcttac tgaccccatt tctgctcacg
     1141 gagctggaga ccgtggggaa catccatttt gaggaaggca ctcgagctga tgaatggttt
     1201 aattcctgct atgaactaat tctctcacgt ttctgcacct gggacttcag agcatacggc
     1261 atcacagggg tgaaagtcaa gcgtgtcatt aaagtcaaca accgtattct gagactgaga
     1321 tttgaagaga aattccaaaa gtgtttggat ctagaggaca tacaagattc agagagctat
     1381 cgaaagatgc tggaatgcct cttctacgtc tttgatcctg aagtgacagt aaagaaaaag
     1441 catctgctac aaatacttga gaggggattc aaagacagcg acacaagcaa gccccctctt
     1501 agaaaggaag ctgttaccct tgtgaacagc ctcagtatgt gtgagtgccc ccgaatcgag
     1561 ttcctccagc agaagtataa agaggagaag aaaagcccat cagagagcga cctctacaga
     1621 cacggcacca tcctcattgc gaaggttttt cttggccaga gtattcaggc tcgtgaccag
     1681 gaacccatca gtaaagccaa ctaccccatg gttaactcgg tgtttgttcc tcagagacac
     1741 atgctaagac aaagaacttg tgattgtgga tatcggcagt acaaatggtt tgtctttgac
     1801 cacgacctgg ttttgccaga gtacatcgtt gagtttgagt atactacagt ggtcaaagtc
     1861 cactctttat tttccacatt aaacaatgtt attctagaag aaggcaaaaa gtattctgaa
     1921 ggattagtat tctcgcagga tttgaagttt gacgatgaag ttctgaagat ggagcccagg
     1981 attaagcccc gcccaaaact cattagtttg gatgagaaga caataatttc ccttgctagg
     2041 actaatattt atagccatat tgtgaatctg aatctacatg ggaatagctt gagtaaactg
     2101 agagatcttt ccaagttaac tgggcttcga aaactgaaca ttagctttaa cgagtttact
     2161 tgcttagatg atgtctacca cttgtacaac ctagagtatc tggacgccag ccataaccat
     2221 gtgataaccc tggagggctt ccgaggcctg atgaagctga agcatttaga cttgagctgg
     2281 aatcagctca agaagacagg cgaagagatc aacgtgctgt gcaaacacac caccagcctc
     2341 ctcaccctgg acatccagca caacccctgg cagaagccag ccacattgag gctgagtgtt
     2401 attggcagac taaagactct tacgcactta gacggactcc tcatctctga agaagaaacc
     2461 agagcagctc tgaaattcat tagtggaaca aagattactc agttaactct cttacagcat
     2521 tctagctcta aagaggaaag acctcggatg ctcagtatat ggccttctgc caaaattctg
     2581 acccagattt caaagttagg accccacttt catctgactg ggaactggta cttgaagata
     2641 actgccttaa atttagatgg acaacatctc tttgaaatca caaatctaga aaaattggag
     2701 aatttgaaat gggcatcgtt cagcaataat aacctctcca aaatggaagg ccttgagtcc
     2761 tgtgtcaacc tggaggagct cacattagat ggcaactgca tctcaaagat agaaggcatc
     2821 accaggctga ccaaactaag ccgcctcagc atgaacaaca accttctcac cggcctggag
     2881 aagcacacgt ttgataacat gcttcatctc cactccctct ctctcgagaa caacaggatc
     2941 acatcactga gcgctttaca aaagacattc actctgatcg agttgtacat aagcaataac
     3001 tacatagccg tgaaccaaga gatctacaac ttaaagggtt tatgcaactt ggtcattcta
     3061 gacatgtatg gaaacattat tatatggaac caagaaaact accggctgtt tgtaatattt
     3121 catctttctg aactgaaggc cttggatgga atgtcaattg aaccatcaga gactgagaat
     3181 gcaaaagatt tgtttggtgg tcgtctcacc tctgacatga ttgctgaacg acaaggacac
     3241 tcaaactttg tccaaatgca agagctaaac tggacctcct catccatcag gactgtggat
     3301 ctgattcctg ttgaccactt caggaatgtg agcaatgtga atctccagaa caacaacctc
     3361 acgtcattca gtggcctcat ctacctgccc aatgtgaagg cacgtggctg ccgagccata
     3421 tttgccctca aagacttcag cacaagtttt aatcttcatt tacattaaac tgtattcctt
     3481 attaa
//
