LOCUS       XM_003751096            2766 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus leucine rich repeat containing 74B
            (Lrrc74b), mRNA.
ACCESSION   XM_003751096
VERSION     XM_003751096.5
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq; corrected model.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051346.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_003751096.6.
            
            On Jan 21, 2021 this sequence version replaced XM_003751096.4.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            frameshifts :: corrected 1 indel
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-211               JACYVU010000222.1  62760362-62760572
            212-354             JACYVU010000222.1  62761295-62761437
            355-487             JACYVU010000222.1  62761791-62761923
            488-694             JACYVU010000222.1  62762726-62762932
            695-804             JACYVU010000222.1  62766727-62766836
            805-920             JACYVU010000222.1  62767782-62767897
            921-999             JACYVU010000222.1  62771261-62771339
            1000-1095           JACYVU010000222.1  62772845-62772940
            1096-1206           JACYVU010000222.1  62777012-62777122
            1207-1208           "NN"               1-2
            1209-2766           JACYVU010000222.1  62777123-62778680
FEATURES             Location/Qualifiers
     source          1..2766
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="11"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2766
                     /gene="Lrrc74b"
                     /note="leucine rich repeat containing 74B; The sequence of
                     the model RefSeq transcript was modified relative to its
                     source genomic sequence to represent the inferred CDS:
                     inserted 2 bases in 1 codon; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 2
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 40 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:100361946"
                     /db_xref="RGD:2319134"
     CDS             76..1269
                     /gene="Lrrc74b"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: inserted 2 bases in 1 codon"
                     /codon_start=1
                     /product="LOW QUALITY PROTEIN: leucine-rich
                     repeat-containing protein 74B"
                     /protein_id="XP_003751144.4"
                     /db_xref="GeneID:100361946"
                     /db_xref="RGD:2319134"
                     /translation="MKGPCKEVQKNEDQEGEAAATGPQAETLEAKKSWTANSHSALET
                     EGTHGLGERVMADLYLESCRANSVVPVSRLLRQGSASELNLQHRGLGPQGIRALASTL
                     TSNLYIKRLDLRDNELGGAGAEALADVLRKNSVISDVDLSENQIGAAGLQAICTALTL
                     NPTVQKMQLQGNRLEEKAAQHLAALLLRHTGLKSLDLSYNQLNDLAGETLGPAVAENT
                     GLTELNLSWNHLRGLGAIAFARGLEANIFLKVLDISHNGFGDSGACAVGEALRVNNVL
                     EELNMRNNRISTSGALKLGLGLQVNQTLRVLIISKNPICSDGCVGLLKSVRSNKSSGL
                     ELLDVSGIQVSRECDELASSMSEAFPGLCIKHCTSRRKDWPQAXPSQLSSAPSGSSLT
                     SNTQL"
ORIGIN      
        1 acatccctgg gaagagttcc aggcagtgag ctctgtgctc tcgtctgcgt ccctgactgg
       61 gtagtgagag taaacatgaa gggtccctgc aaggaggttc agaagaatga agatcaagag
      121 ggagaagctg cggccactgg gcctcaggcg gagaccctgg aggccaagaa gtcctggact
      181 gcaaattcac actctgctct ggaaacagaa ggcacccatg ggcttggaga acgggtcatg
      241 gctgacctct atctggagtc ttgccgggcc aatagtgttg tgcccgtttc tcgtcttctg
      301 cgccaaggga gcgcctccga actgaatctt cagcaccgtg gcctggggcc ccaggggatc
      361 cgggctttgg cttccacact gacctctaat ctctacatca agcgcctgga tctccgggac
      421 aatgagctcg gtggtgctgg agcagaggct ctggctgacg tccttcgtaa gaacagcgtt
      481 atctctgatg tggacctgtc agagaatcag attggagctg cagggctcca ggccatctgc
      541 actgccctca ccttaaaccc aactgttcag aagatgcagc tgcaagggaa caggctggag
      601 gaaaaggcag cccagcacct cgctgctctt ctgctgcgtc acactggcct gaaatctcta
      661 gacctcagct ataatcagct caatgacctg gcaggagaga cacttggacc tgcggtggca
      721 gaaaacaccg gactcacaga gcttaacctg agttggaatc accttcgagg cctgggagcc
      781 attgcatttg ctagaggcct ggaggcaaat atattcttga aggtcctaga catctctcac
      841 aatggctttg gagactctgg cgcctgtgcg gtaggcgagg ccctcagggt caacaatgtg
      901 ttagaagaat taaatatgag aaacaaccgc atctccacgt caggagccct gaagttgggg
      961 ttgggtcttc aagtcaacca aacacttcgg gttctgatta tttccaagaa tcctatttgc
     1021 agcgatggct gtgtcggcct ccttaagtct gtccggagca acaaatcgtc tggcctagaa
     1081 ctactggatg tgtctggtat ccaagtaagc agagagtgcg atgagctcgc cagctccatg
     1141 agcgaagctt ttccaggact ctgtataaag cactgcactt ccagaagaaa agactggcca
     1201 caagccnnac catcccagct gtcatctgca ccaagtggct ctagtctcac ctctaatacg
     1261 caactttaac attcacattg ctgcccgttc agtatgtgta ccaacacgtg tatcttcctt
     1321 tctgctctct ggcatcgtcc atcatctggc ttcatttgct gtggttcatt tcattcaacc
     1381 aaaatctgcc catgaacaac gctgaacaca aggttaacga tgtctgtatc atccagaggt
     1441 tcatgttccg atgaccctgt taaacaaaac ataaaggaga tgtgcaaatg gaatccccaa
     1501 gctcttctcg aaagaagaca aactgccaca acccattgga aagcaactga tcgttacatt
     1561 ccgagttcta aagtcaccca tgggcttcag tcaagtcaac tcactaattc gctctacaga
     1621 aacaaccgga gctgcataga agctactgct gattggccag ggtgtatgac tcaggagtgt
     1681 ttgcctggca tacaggaaac tcttggttga ttctgcacca tcgtataaag aagcatgatg
     1741 atgtgtgcct gtaattctag cacaccataa gtgtctcaat atgtatgtgt gtgtatagac
     1801 agacagacag acagacagac agtcagatag ataggtaggt agatagatag atagatagat
     1861 agatagatag atagatagat aggtaggtag atagatagat agatagatag atagatagat
     1921 agatagatag atagatagat agagttggtg acacatgctt gttactctgg ccctttggag
     1981 actgagtcag aagaagcatg gtgacttaag accagacagg ggtatatgta gcaagatcct
     2041 gtagaaaaga gatctagcca catactttgt ctccaaatgt ctatttcacc aattttccaa
     2101 tcatgctctt tccaagtccc tgacaatcca gccagtccca ttggctacag tccatgagtc
     2161 aatgaacaat catacacctg gccacttctt gcaaacaaaa caaatggcca cgcgtactgc
     2221 cccaaattct gtttactgtg aagactttgc ttctccagtg tctctcataa ctgtctcaga
     2281 aaggggttga aatgctacag ctcttcactc ctgagtgatg cctgcttaaa ccttcctcag
     2341 ttaattggtc atgtgcacgc ctcatgaggc tgcagataac tgcttgagag aagacagcat
     2401 tgtaacagga acagaaaccg taggtgttta ggcaacccct gaaagcaact tgcttgtgcc
     2461 ctaagacctc cttgggcctt atcattcctc tgtgtgtgtg tgtgtgtgtg tgtgtgtgtg
     2521 tgtgtgtgta tcactttcag ttgataatgg attgctgctg tgcatgtcct atttttatgg
     2581 tttggttggt caggtcagat aatcctcaga tcataatggg aacttcatga ccgcaagtcc
     2641 aaagtagtta ctaccttctg cttacttgtt aggctgcata ctgttgtcaa aaaaagtgaa
     2701 ccactgtgat attttgtgga acagacagat gaccaagaaa ccttcaaata aagtcatggc
     2761 acagag
//
