LOCUS       XM_039113174            1164 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus leucine rich repeat containing 72
            (Lrrc72), transcript variant X1, mRNA.
ACCESSION   XM_039113174
VERSION     XM_039113174.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051341.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039113174.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1164
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="6"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1164
                     /gene="Lrrc72"
                     /note="leucine rich repeat containing 72; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 1 EST, 5 Proteins, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 3 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:298963"
                     /db_xref="RGD:1560395"
     CDS             106..966
                     /gene="Lrrc72"
                     /codon_start=1
                     /product="leucine-rich repeat-containing protein 72
                     isoform X1"
                     /protein_id="XP_038969102.1"
                     /db_xref="GeneID:298963"
                     /db_xref="RGD:1560395"
                     /translation="MSRNQKSSLPIFPCAKLQKVSENALPSSLKALEDQLKICGHKKD
                     IDVLELFLSKKDLTEVVDLSRFKKLRYLWLHHNKLQGISFLTRNYCLAELYLNHNALF
                     QIEGLHNLPSLNILLLHHNELTNIDATVKELKGMQNLKTLSLYQNPLSQYNLYRLYII
                     YHLPGLELLDRKEITAKERRNMITIFNHKKTHVLQSIAFGKRADASWNPKLAIKQKRV
                     KKLPSDFAFGDNLDKTVFDDPEDAVFVRSTKRSLMTFTSMNWDTVLTRREKYEKKKSS
                     ATQMLMVSLR"
ORIGIN      
        1 cctgatttat tttggtcttt agtggacgga aaggtagaaa ggaaggaggc ggccttggcc
       61 aaacccagtg ggttattggt ggccttcact gccaaagttt tcttgatgtc cagaaaccag
      121 aagtcctcct tgcccatctt tccatgtgct aaactccaga aggtgtcaga aaatgctctg
      181 ccaagcagtc tgaaggcact tgaagatcag ctaaagatat gtggccacaa gaaggatatt
      241 gacgtcttgg aactgttcct ttctaaaaaa gacctgacag aggttgttga tctttctaga
      301 tttaaaaaat taagatattt gtggctccat cataataagc tgcaagggat atcattttta
      361 actcgaaact actgtctggc ggagctgtat ctaaaccaca acgccctatt ccagatagaa
      421 ggcctgcata acttgccttc actgaatatt ctcctgttgc accacaatga gctaacaaac
      481 atcgatgcta ctgtgaagga actaaagggc atgcagaatc taaagaccct aagtctgtac
      541 caaaaccctc tgtcccagta taacctctac cgcttgtata taatctacca ccttccagga
      601 ctggagttac ttgatcggaa ggaaattaca gcgaaagaga ggagaaacat gattaccatt
      661 tttaaccaca aaaaaactca cgtccttcaa tcaatagcat tcggaaaaag agcagatgcc
      721 tcatggaacc ccaagttagc aataaagcaa aaacgagtca aaaagcttcc ctcagatttt
      781 gcatttgggg ataatcttga caagacagta tttgatgacc ctgaagatgc tgtgtttgta
      841 agatccacaa agagatcact gatgaccttt acctccatga actgggacac cgttctaaca
      901 cgaagagaga agtatgaaaa gaaaaagagc tctgctacgc agatgctcat ggtttccctg
      961 cggtgacagc atttccagga aacctggtgc tgttcagtta catgtgaaaa cacttccgtg
     1021 atttagctcc ttatacactg attgctaact gaaattttaa aatagatgga tcagtggtga
     1081 gaattgtttc ctacactgta agtttcataa tgtaaaaatt ctgagttact catgtgtaaa
     1141 aaataaagct attttttcct ccca
//
