LOCUS       NM_001395079            3008 bp    mRNA    linear   ROD 29-MAR-2024
DEFINITION  Rattus norvegicus leucine rich repeat containing 61 (Lrrc61),
            transcript variant 2, mRNA.
ACCESSION   NM_001395079 XM_006236435
VERSION     NM_001395079.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3008)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000004.1.
            
            On Jun 3, 2021 this sequence version replaced XM_006236435.4.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26360176.670775.1,
                                           SRR26643290.15980.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760386
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-134               JAXUCZ010000004.1  78834783-78834916
            135-3008            JAXUCZ010000004.1  78851937-78854810
FEATURES             Location/Qualifiers
     source          1..3008
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="4"
                     /map="4q24"
     gene            1..3008
                     /gene="Lrrc61"
                     /gene_synonym="RGD1561800"
                     /note="leucine rich repeat containing 61"
                     /db_xref="GeneID:500111"
                     /db_xref="RGD:1561800"
     exon            1..134
                     /gene="Lrrc61"
                     /gene_synonym="RGD1561800"
                     /inference="alignment:Splign:2.1.0"
     exon            135..3008
                     /gene="Lrrc61"
                     /gene_synonym="RGD1561800"
                     /inference="alignment:Splign:2.1.0"
     CDS             243..1022
                     /gene="Lrrc61"
                     /gene_synonym="RGD1561800"
                     /codon_start=1
                     /product="leucine-rich repeat-containing protein 61"
                     /protein_id="NP_001382008.1"
                     /db_xref="GeneID:500111"
                     /db_xref="RGD:1561800"
                     /translation="MEPPGEKPGEAEALIITPQLLKSHSGEFALDSILLLKLRGLGVV
                     DLGCLGECLNLEWLDLSGNALTHLGPLASLHQLAVLNVSNNRLTGLEPLAACENLQSL
                     NAAGNLLTNPGQLQCLAGLQGLEHLRLRDPLARLSNPLCVNPSYWAAVRELLPGLKVI
                     DGERVSGRGSELYQLCRDLDSSLRSSTSLGPRAIEVQPWVEPGYWESWPIRSSSILEE
                     ACRQFQDTLQECLDLDRQASDSLAQAQQALRPAKTTSSFVF"
ORIGIN      
        1 gggcctgctc cgggagtttg ggggatgctg gattcttccg gaaccgcccg cgaccagtgg
       61 ccactccctc agctccagga actgcctgag tgcagttaca aacagaacgc ttgaaccggt
      121 gacagtcacg tgagggccca ggcagaatcg agggagagca gccagctgat cctcagaggc
      181 accagcatcc ctgaggctaa ctgcactgcc agggcctggc cttctgaacc atcttcagta
      241 tcatggagcc tcctggagag aagccaggag aagctgaggc actgattatc acaccccagc
      301 tgctgaagtc ccactctgga gagtttgccc tggattccat cctgttgctg aaacttcgag
      361 gtttaggggt ggtggatctg ggttgtttgg gggaatgcct taaccttgag tggcttgacc
      421 tatcaggcaa cgcacttacc cacttgggcc cactggcgtc cctgcaccag ctggctgtgc
      481 ttaacgtctc caataatcga ctgacagggc tggagccact agcagcctgt gagaacctgc
      541 agagcctcaa tgctgctggg aacctgctga ccaatcccgg ccagcttcag tgtctggctg
      601 ggctgcaggg cctggagcac ctgaggctcc gggacccttt ggcccggctt agcaacccac
      661 tttgtgtaaa tccctcctac tgggctgcgg tccgagagct gctgcctggc ctcaaagtca
      721 tagacgggga acgtgtgagt gggcggggca gtgagttgta ccagttatgc cgagacctgg
      781 acagttcctt gcgctccagc accagcctag gccccagagc cattgaggtc cagccgtggg
      841 tagagcccgg ctactgggag tcctggccca tccggagcag ctccattctg gaggaggcct
      901 gccggcagtt ccaggacaca ctgcaggaat gccttgacct ggatcgtcag gccagtgata
      961 gcttggccca ggcccagcag gctctcaggc ctgcgaaaac cacctcttcc tttgtcttct
     1021 gaatgcaact caacagccaa ggtagtctgg ccatggtagt ctgatggatc gtagacattc
     1081 ctcccctgcc catgcccttg cctctccgtt tatttttttc tggtcactga ccctgcaaac
     1141 taggtcgttc attcatccct ttcttgagag cttcctaact cctacatctc ccaacgacat
     1201 ttcctgcccc gtccgcaggg gcatgctttc caggtagcct ctagaaggta gaggaaatcc
     1261 cctcattatc aactacacta catatacaaa tacactatgc agccaggctc cagacgtgct
     1321 gagcctggct ccctcagatg cccaacctaa ggctttgtgg gtaaggttca ttgccacctg
     1381 ctaactccta ttaaatagtt ctgtgctcat atgtatcttt tcttgtctct tctcagccaa
     1441 cacgggcttc tgtacctctg ctttggtcct gtgggaggct cctacactta ctccacctgc
     1501 ttctctctca tgctaggtag gaagtgtgaa gatgctcaca cgcacgcgta cacacacaca
     1561 cacacacaca cacacacaca cacacacaga gtctttgagc ttccctcata tgtacaggtt
     1621 gagctgaggg aagaacaaca acacaagttt ggaaaggaac agttttatta gcctggagtt
     1681 gaaagtcttt gggaggccat atggtgggta ccgccacggc tgtacaggaa gtaagatgaa
     1741 accctacaga agaagggaaa accagattgg gtgtgtagga ggttattttt gttctgatct
     1801 tggcttttat ttttccattt cacatgtccc ctttcttcct cctttagccc aatttcccca
     1861 tgacccctaa tggccctccc cattaaccac gtacctgtcc agggcttatt tggattgtag
     1921 agccctggag aaggcaaact gcccagggaa gaagtagatg cgggagtcct cgccggcctg
     1981 tgctatctta ctgcactggg attcctgagg ctcctgctag aagcagccag tgctcgttgc
     2041 agcaatgcct aggaagggag gcacctccac aaccccaggg gaatgtccca gccatcccct
     2101 acccaggtct tctttccagg tttcctgtac ttctcctaca gacttggatt tgatctgtcc
     2161 ctccaggcct ctccctaacc tctttccctt cttacctgag gcccttgctt cagtattggg
     2221 cagtggacca tccggcctag aactttaccc ttggggtcca gtttgatgca ggccaggcat
     2281 ttccgcttcc tctggggagg agaacatgag tgtcagggtg gagactggcc tcctggcctg
     2341 ttctaaagtg gagggatgtg gtgatttgaa taagaatgtc ccccataggg cgagatattt
     2401 gaatacttgg tctccaattg gtggtgctgt ttggggagtt ttagaaggtt tgaccttgat
     2461 ggaggaagta cttcactggg gcgggcttta agatttaaaa ccttggacca ctcccaattc
     2521 actctgcttc ttgtttacat gcaaggctgt gagtgctcag cttcctgctc tggtggcatc
     2581 cacgtctccc tacctcccac cctgatggac ttttattcct ctggaaactt aggccaaaat
     2641 aaacctttcc tattattagt tgatcttgat gatggtattt tatcaggaca acaataacag
     2701 aagcagatgg acatgcaact taccctgaga ggagattttg gaagttctcc cctttggaca
     2761 cagtctcaag tagcccagac tgatctagaa tttgtagttt gcctgcttta acttctccaa
     2821 tgctggcatt caagtgtgtg ctacccttgg tttgcctgca gactatagtg ctttatcctg
     2881 tgcaggggcc attcctgtgt gaacatgcgt atgtgtactg ctcacaggta gtacactgca
     2941 cgggtgtatt cacaggggcc tgtgttaatg tgcaaacatg tttaaaggca agaattcccc
     3001 agatggtg
//
