LOCUS       NM_001195558            1155 bp    mRNA    linear   ROD 30-MAR-2024
DEFINITION  Rattus norvegicus leucine rich repeat containing 58 (Lrrc58), mRNA.
ACCESSION   NM_001195558 XM_001069929 XM_221433
VERSION     NM_001195558.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1155)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
REFERENCE   2  (bases 1 to 1155)
  AUTHORS   Bonaldo,M.F., Lennon,G. and Soares,M.B.
  TITLE     Normalization and subtraction: two approaches to facilitate gene
            discovery
  JOURNAL   Genome Res 6 (9), 791-806 (1996)
   PUBMED   8889548
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from
            JAXUCZ010000011.1.
            
            On or before Nov 24, 2010 this sequence version replaced
            XM_221433.5, XM_001069929.2.
            
            Sequence Note: This RefSeq record was created from Celera genomic
            sequence data as a full-length  transcript is not represented in
            the current reference genome assembly. The genomic coordinates used
            for the transcript record were based on transcript alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643290.39357.1,
                                           SRR26643299.48131.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN12840129 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-539               JAXUCZ010000011.1  76367771-76368309   c
            540-668             JAXUCZ010000011.1  76360312-76360440   c
            669-946             JAXUCZ010000011.1  76358959-76359236   c
            947-1155            JAXUCZ010000011.1  76355987-76356195   c
FEATURES             Location/Qualifiers
     source          1..1155
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="11"
                     /map="11q21"
     gene            1..1155
                     /gene="Lrrc58"
                     /gene_synonym="RGD1307440"
                     /note="leucine rich repeat containing 58"
                     /db_xref="GeneID:303919"
                     /db_xref="RGD:1307440"
     exon            1..539
                     /gene="Lrrc58"
                     /gene_synonym="RGD1307440"
                     /inference="alignment:Splign:2.1.0"
     CDS             55..1155
                     /gene="Lrrc58"
                     /gene_synonym="RGD1307440"
                     /codon_start=1
                     /product="leucine-rich repeat-containing protein 58"
                     /protein_id="NP_001182487.1"
                     /db_xref="GeneID:303919"
                     /db_xref="RGD:1307440"
                     /translation="MEEAALGEAELNWSRLSVSAEALESELEARAEERRGSREALLRL
                     LLPYNRLTSLPRALGSGFPHLQLLDVSGNALTALGPELLTLSGLRTLLARNNRLGGPG
                     SLPKGLGQSPLCRSLQVLNLSGNCFQELPASLLELRALQTLSLGGNQLQSIPAEIENL
                     QSLECLYLGGNFIKEIPPELANLPSLNYLVLCDNKIQSVPPQLSQLHSLRSLSLHNNL
                     LTYLPREILNLIHLEELSLRGNPLVVRFVRDLTYDPPTLLELAARTIKIRSISYTPYD
                     LPGNLLRYLGSASNCPNPKCGGVYFDCCVRQIKFVDFCGKYRLPLMHYLCSPECSSPC
                     SSASHSSTSQSESDSEDEASVAAHRMQKVLLG"
     exon            540..668
                     /gene="Lrrc58"
                     /gene_synonym="RGD1307440"
                     /inference="alignment:Splign:2.1.0"
     exon            669..946
                     /gene="Lrrc58"
                     /gene_synonym="RGD1307440"
                     /inference="alignment:Splign:2.1.0"
     exon            947..1155
                     /gene="Lrrc58"
                     /gene_synonym="RGD1307440"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 tcgcttcagg ttccggggcg cgccgcctcg gctagcggcc tggggtccgg cgggatggag
       61 gaggccgcgc tcggggaggc cgaactcaac tggtcccgcc tcagcgtgtc ggccgaggcg
      121 ctggagtcgg agctggaggc gcgcgcggag gagcggcgcg gctcacggga ggcgctgctg
      181 cggctgctgc tgccgtataa ccgtctgacg tcgctgccac gggcgctggg cagcggcttc
      241 ccacacctcc agctcctgga cgtgagcggc aacgcgctca cggcgctggg acccgagctg
      301 ctgacgctga gcggcctgcg cacgctgctg gccaggaaca accggctcgg cggcccgggc
      361 tcgctgccca agggcctggg ccagtcgccg ctctgccgca gcctccaggt actcaacctc
      421 agcggcaact gcttccagga gctgccggcc tcgctgctgg agctgcgcgc gcttcagacc
      481 ctcagcctgg gaggcaacca gctgcagagc atccccgccg agatcgagaa cttgcagagt
      541 ttagaatgtt tataccttgg aggaaacttc attaaagaaa tcccaccaga attagcaaat
      601 ctgccttctc tgaattactt ggtgttgtgt gacaacaaga tccaaagtgt gcctcctcag
      661 ctctcacagc tgcattcgct tcgatccctc agtctacaca ataacttgct gacgtacctg
      721 cctcgagaga tcctcaatct tattcacctg gaagagttga gtttacgagg aaacccattg
      781 gtggtccgtt ttgttagaga tttaacgtat gaccctccaa ctcttctgga attagctgca
      841 aggaccatta agatccgaag tatttcttac actccctatg atcttcctgg gaatcttctt
      901 agatacttgg gctctgccag caattgtcca aacccaaagt gcggtggagt ctattttgac
      961 tgttgtgtca gacagattaa gtttgtggac ttctgtggga agtaccgcct ccccctcatg
     1021 cactatctgt gttctccaga gtgctcctcc ccctgcagct ctgcctcaca cagctccaca
     1081 tcccagagtg agtctgactc agaagatgag gccagtgtgg ccgcacacag aatgcagaaa
     1141 gttcttcttg gttga
//
